S. Ogata

Publication List Details

Period

2000 - 2004

Number

29

Co-Authors

Crack propagation of silicon by hybrid tight-binding molecular dynamics (2004)

Shibutani, Y., Hori, N., Ogata, S., Gumbsch, P.

Highly strained crack-tip fiel of silicon is analyzed using hybridized computational scheme coupling with the order N tight-binding (TB) method and the empirical modified Tersoff potential. The...

Toric varieties - degenerations and fundamental groups (2003)

Amram, M., Ogata, S.

In this paper we calculate fundamental groups (and some of their quotients) of complements of four toric varieties branch curves. For these calculations, we study properties and degenerations of...

Identification and characterization of the Yersinia enterocolitica gsrA gene, which protectively responds to intracellular stress induced by macrophage phagocytosis and to extracellular environmental stress.

Yamamoto, T, Hanawa, T, Ogata, S, Kamiya, S

Yersinia enterocolitica is able to resist the microbicidal mechanisms of macrophages and to grow within phagocytic cells. Some bacteria including Y. enterocolitica have been shown to respond to the...

The Yersinia enterocolitica GsrA stress protein, involved in intracellular survival, is induced by macrophage phagocytosis.

Yamamoto, T, Hanawa, T, Ogata, S, Kamiya, S

The Yersinia enterocolitica gsrA gene is a stress protein gene which was originally identified as essential for protecting cells under both extracellular environmental stress and intracellular stress...

Molecular structure of the replication origin of a Bacillus subtilis (natto) plasmid, pUH1.

Hara, T, Nagatomo, S, Ogata, S, Ueda, S

The structure of a 2.0-kb BstEII DNA sequence necessary and sufficient for the replication of a 5.7-kb Natto plasmid, pUH1, which is responsible for gamma-polyglutamate production by Bacillus...

Multicopy derivative of pock-forming plasmid pSA1 in Streptomyces azureus.

Miyoshi, Y K, Ogata, S, Hayashida, S

Streptomyces azureus carried one copy or less of plasmid pSA1, which elicited pocks at 0.1 to 1.0%. Strain PK100 was isolated from the wild-type strain after UV irradiation. PK100 carried...

A temperate phage of Streptomyces azureus.

Ogata, S, Suenaga, H, Hayashida, S

A new phage, SAt1, was isolated from soil on Streptomyces azureus ATCC 14921. This phage was able to lysogenize S. azureus. The percentage of lysogenic responses was ca. 10%. Electron microscopic...

Comparison of [3H]glucosamine-labeled glycoproteins from human renal cancer and normal kidney epithelial cell cultures by two-dimensional polyacrylamide gel electrophoresis.

Ogata, S, Ueda, R, Lloyd, K O

Two-dimensional polyacrylamide gel electrophoresis has been used to compare the Nonidet P-40 soluble, [3H]glucosamine-labeled glycoproteins of human kidney cancer cell lines and short-term cultures...

Cell surface antigens of human renal cancer defined by mouse monoclonal antibodies: identification of tissue-specific kidney glycoproteins.

Ueda, R, Ogata, S, Morrissey, D M, Finstad, C L, Szkudlarek, J, Whitmore, W F, ...

Seventeen monoclonal antibodies derived from fusions with spleen cells of mice immunized with established culture lines of renal cancers identified nine cell-surface antigenic systems. Six of the...

Serological analysis of cell surface antigens of null cell acute lymphocytic leukemia by mouse monoclonal antibodies.

Ueda, R, Tanimoto, M, Takahashi, T, Ogata, S, Nishida, K, Namikawa, R, ...

Nine antigens systems were defined. Two were related to HLA-A,B,C and to Ia-like antigens; the others could be grouped into three categories. (i) NL-22, NL-1: NL-22 antibody reacted with leukemia...

Structure of the glycosylphosphatidylinositol membrane anchor of human placental alkaline phosphatase.

Redman, C A, Thomas-Oates, J E, Ogata, S, Ikehara, Y, Ferguson, M A

The glycosylphosphatidylinositol membrane anchor of human placental alkaline phosphatase was isolated by exhaustive proteolysis followed by hydrophobic interaction chromatography. The resulting...

Carbohydrate structures of the third component of rat complement. Presence of both high-mannose and complex type oligosaccharide chains.

Miki, K, Ogata, S, Misumi, Y, Ikehara, Y

We investigated the carbohydrate structure of the third component of complement (C3) newly synthesized by cultured rat hepatocytes. When the cells were incubated with [3H]mannose, [3H]galactose or...

Purification and characterization of a major glycoprotein in rat hepatoma plasma membranes. One of the membrane proteins released by phosphatidylinositol-specific phospholipase C.

Ikehara, Y, Hayashi, Y, Ogata, S, Miki, A, Kominami, T

A major glycoprotein of rat hepatoma plasma membranes was selectively released as a soluble form by incubating the membrane with phosphatidylinositol-specific phospholipase C. The soluble form...

Cloning, structure and expression of cDNA for mouse contrapsin and a related protein.

Ohkubo, K, Ogata, S, Misumi, Y, Takami, N, Sinohara, H, Ikehara, Y

A cDNA clone (lambda MC-2) for contrapsin, a serine-proteinase inhibitor, was isolated from a lambda ZAP mouse liver cDNA library. The 1.6 kb cDNA insert of lambda MC-2 contained an open reading...

Identification and characterization of the Yersinia enterocolitica gsrA gene, which protectively responds to intracellular stress induced by macrophage phagocytosis and to extracellular environmental stress.

Yamamoto, T, Hanawa, T, Ogata, S, Kamiya, S

Yersinia enterocolitica is able to resist the microbicidal mechanisms of macrophages and to grow within phagocytic cells. Some bacteria including Y. enterocolitica have been shown to respond to the...

The Yersinia enterocolitica GsrA stress protein, involved in intracellular survival, is induced by macrophage phagocytosis.

Yamamoto, T, Hanawa, T, Ogata, S, Kamiya, S

The Yersinia enterocolitica gsrA gene is a stress protein gene which was originally identified as essential for protecting cells under both extracellular environmental stress and intracellular stress...

Molecular structure of the replication origin of a Bacillus subtilis (natto) plasmid, pUH1.

Hara, T, Nagatomo, S, Ogata, S, Ueda, S

The structure of a 2.0-kb BstEII DNA sequence necessary and sufficient for the replication of a 5.7-kb Natto plasmid, pUH1, which is responsible for gamma-polyglutamate production by Bacillus...

Multicopy derivative of pock-forming plasmid pSA1 in Streptomyces azureus.

Miyoshi, Y K, Ogata, S, Hayashida, S

Streptomyces azureus carried one copy or less of plasmid pSA1, which elicited pocks at 0.1 to 1.0%. Strain PK100 was isolated from the wild-type strain after UV irradiation. PK100 carried...

A temperate phage of Streptomyces azureus.

Ogata, S, Suenaga, H, Hayashida, S

A new phage, SAt1, was isolated from soil on Streptomyces azureus ATCC 14921. This phage was able to lysogenize S. azureus. The percentage of lysogenic responses was ca. 10%. Electron microscopic...

Comparison of [3H]glucosamine-labeled glycoproteins from human renal cancer and normal kidney epithelial cell cultures by two-dimensional polyacrylamide gel electrophoresis.

Ogata, S, Ueda, R, Lloyd, K O

Two-dimensional polyacrylamide gel electrophoresis has been used to compare the Nonidet P-40 soluble, [3H]glucosamine-labeled glycoproteins of human kidney cancer cell lines and short-term cultures...

Cell surface antigens of human renal cancer defined by mouse monoclonal antibodies: identification of tissue-specific kidney glycoproteins.

Ueda, R, Ogata, S, Morrissey, D M, Finstad, C L, Szkudlarek, J, Whitmore, W F, ...

Seventeen monoclonal antibodies derived from fusions with spleen cells of mice immunized with established culture lines of renal cancers identified nine cell-surface antigenic systems. Six of the...

Serological analysis of cell surface antigens of null cell acute lymphocytic leukemia by mouse monoclonal antibodies.

Ueda, R, Tanimoto, M, Takahashi, T, Ogata, S, Nishida, K, Namikawa, R, ...

Nine antigens systems were defined. Two were related to HLA-A,B,C and to Ia-like antigens; the others could be grouped into three categories. (i) NL-22, NL-1: NL-22 antibody reacted with leukemia...

Structure of the glycosylphosphatidylinositol membrane anchor of human placental alkaline phosphatase.

Redman, C A, Thomas-Oates, J E, Ogata, S, Ikehara, Y, Ferguson, M A

The glycosylphosphatidylinositol membrane anchor of human placental alkaline phosphatase was isolated by exhaustive proteolysis followed by hydrophobic interaction chromatography. The resulting...

Carbohydrate structures of the third component of rat complement. Presence of both high-mannose and complex type oligosaccharide chains.

Miki, K, Ogata, S, Misumi, Y, Ikehara, Y

We investigated the carbohydrate structure of the third component of complement (C3) newly synthesized by cultured rat hepatocytes. When the cells were incubated with [3H]mannose, [3H]galactose or...

Purification and characterization of a major glycoprotein in rat hepatoma plasma membranes. One of the membrane proteins released by phosphatidylinositol-specific phospholipase C.

Ikehara, Y, Hayashi, Y, Ogata, S, Miki, A, Kominami, T

A major glycoprotein of rat hepatoma plasma membranes was selectively released as a soluble form by incubating the membrane with phosphatidylinositol-specific phospholipase C. The soluble form...

Cloning, structure and expression of cDNA for mouse contrapsin and a related protein.

Ohkubo, K, Ogata, S, Misumi, Y, Takami, N, Sinohara, H, Ikehara, Y

A cDNA clone (lambda MC-2) for contrapsin, a serine-proteinase inhibitor, was isolated from a lambda ZAP mouse liver cDNA library. The 1.6 kb cDNA insert of lambda MC-2 contained an open reading...

Clinical complications of Mycoplasma pneumoniae disease--central nervous system.

Ogata, S., Kitamoto, O.

The mechanism of the neurologic complications associated with primary atypical pneumonia is unknown. To examine the ability of Mycoplasma pneumoniae to enter the brain of experimental animals, the...

Hypermethylation of the hMLH1 gene promoter in solitary and multiple gastric cancers with microsatellite instability

Sakata, K, Tamura, G, Endoh, Y, Ohmura, K, Ogata, S, Motoyama, T

Human cancers with a high frequency microsatellite instability phenotype develop due to defects in DNA mismatch repair genes. Silencing of a DNA mismatch repair gene, hMLH1 gene, by promoter...