Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays (2009)
Hazen, Samuel P, Naef, Felix, Quisel, Tom, Gendron, Joshua M, Chen, Huaming, Ecker, Joseph R, ...
Abstract Background Organisms are able to anticipate changes in the daily environment with an internal oscillator know as the circadian clock. Transcription is an important mechanism in maintaining...
A Morning-Specific Phytohormone Gene Expression Program underlying Rhythmic Plant Growth (2008)
Todd P. Michael, Ghislain Breton, Samuel P. Hazen, Henry Priest, Todd C. Mockler, Steve A. Kay, ...
Most organisms use daily light/dark cycles as timing cues to control many essential physiological processes. In plants, growth rates of the embryonic stem (hypocotyl) are maximal at different times...
Cellulose Synthase-Like Genes of Rice 1 (2008)
Samuel P. Hazen, Jonathan D. Walton
Gene prediction in eukaryota...........................................................................................................1
Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules (2008)
Todd P. Michael, Todd C. Mockler, Ghislain Breton, Connor McEntee, Amanda Byer, Jonathan D. Trout, ...
Correct daily phasing of transcription confers an adaptive advantage to almost all organisms, including higher plants. In this study, we describe a hypothesis-driven network discovery pipeline that...
Garvin, David F., Gu, Yong-Qiang Q., Hasterok, Robert, Hazen, Samuel P., Jenkins, Glyn, Mockler, Tod C., ...
Grass crop genomics research frequently is hindered by large genome sizes and polyploidy. While rice is an attractive system for grass genomics due to its small genome size and available genome...
Network discovery pipeline elucidates conserved time of day specific cis-regulatory modules (2007)
Todd P Michael, Todd C Mockler, Ghislain Breton, Connor McEntee, Amanda Byer, Jonathan D. Trout, ...
Correct daily phasing of transcription confers an adaptive advantage to almost all organisms, including higher plants. In this study we describe a hypothesis driven network discovery pipeline that...
Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana (2007)
Borevitz, Justin O., Hazen, Samuel P., Michael, Todd P., Morris, Geoffrey P., Baxter, Ivan R., Hu, Tina T., ...
Tatjana Singer, Yiping Fan, Hur-Song Chang, Tong Zhu, Samuel P. Hazen, Steven P. Briggs
Recombinant populations were the basis for Mendel's first genetic experiments and continue to be key to the study of genes, heredity, and genetic variation today. Genotyping several hundred thousand...
Tatjana Singer, Yiping Fan, Hur-Song Chang, Tong Zhu, Samuel P Hazen, Steve P Briggs
Recombinant populations were the basis for Mendel's first genetic experiments and continue to be key to the study of genes, heredity and genetic variation today. Genotyping several hundred thousand...
Quantitative Trait Loci and Comparative Genomics of Cereal Cell Wall Composition1
Hazen, Samuel P., Hawley, Robin M., Davis, Georgia L., Henrissat, Bernard, Walton, Jonathan D.
Quantitative trait loci (QTLs) affecting sugar composition of the cell walls of maize (Zea mays) pericarp were mapped as an approach to the identification of genes involved in cereal wall...
Baxter, Ivan R., Young, Jeffery C., Armstrong, Gordon, Foster, Nathan, Bogenschutz, Naomi, Cordova, Tatiana, ...
The plasma membrane in plant cells is energized with an electrical potential and proton gradient generated through the action of H+ pumps belonging to the P-type ATPase superfamily. The Arabidopsis...
LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms
Hazen, Samuel P., Schultz, Thomas F., Pruneda-Paz, Jose L., Borevitz, Justin O., Ecker, Joseph R., Kay, Steve A.
In higher plants, the circadian clock orchestrates fundamental processes such as light signaling and the transition to flowering. We isolated mutants of the circadian clock from an Arabidopsis...
Rapid Array Mapping of Circadian Clock and Developmental Mutations in Arabidopsis1
Hazen, Samuel P., Borevitz, Justin O., Harmon, Frank G., Pruneda-Paz, Jose L., Schultz, Thomas F., Yanovsky, Marcelo J., ...
Classical forward genetics, the identification of genes responsible for mutant phenotypes, remains an important part of functional characterization of the genome. With the advent of extensive genome...
Singer, Tatjana, Fan, Yiping, Chang, Hur-Song, Zhu, Tong, Hazen, Samuel P, Briggs, Steven P
Recombinant populations were the basis for Mendel's first genetic experiments and continue to be key to the study of genes, heredity, and genetic variation today. Genotyping several hundred thousand...
Quantitative Trait Loci and Comparative Genomics of Cereal Cell Wall Composition1
Hazen, Samuel P., Hawley, Robin M., Davis, Georgia L., Henrissat, Bernard, Walton, Jonathan D.
Quantitative trait loci (QTLs) affecting sugar composition of the cell walls of maize (Zea mays) pericarp were mapped as an approach to the identification of genes involved in cereal wall...
Baxter, Ivan R., Young, Jeffery C., Armstrong, Gordon, Foster, Nathan, Bogenschutz, Naomi, Cordova, Tatiana, ...
The plasma membrane in plant cells is energized with an electrical potential and proton gradient generated through the action of H+ pumps belonging to the P-type ATPase superfamily. The Arabidopsis...
Rapid Array Mapping of Circadian Clock and Developmental Mutations in Arabidopsis1
Hazen, Samuel P., Borevitz, Justin O., Harmon, Frank G., Pruneda-Paz, Jose L., Schultz, Thomas F., Yanovsky, Marcelo J., ...
Classical forward genetics, the identification of genes responsible for mutant phenotypes, remains an important part of functional characterization of the genome. With the advent of extensive genome...
LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms
Hazen, Samuel P., Schultz, Thomas F., Pruneda-Paz, Jose L., Borevitz, Justin O., Ecker, Joseph R., Kay, Steve A.
In higher plants, the circadian clock orchestrates fundamental processes such as light signaling and the transition to flowering. We isolated mutants of the circadian clock from an Arabidopsis...
Singer, Tatjana, Fan, Yiping, Chang, Hur-Song, Zhu, Tong, Hazen, Samuel P, Briggs, Steven P
Recombinant populations were the basis for Mendel's first genetic experiments and continue to be key to the study of genes, heredity, and genetic variation today. Genotyping several hundred thousand...
Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana
Borevitz, Justin O., Hazen, Samuel P., Michael, Todd P., Morris, Geoffrey P., Baxter, Ivan R., Hu, Tina T., ...
We used hybridization to the ATH1 gene expression array to interrogate genomic DNA diversity in 23 wild strains (accessions) of Arabidopsis thaliana (arabidopsis), in comparison with the reference...
Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules
Michael, Todd P, Mockler, Todd C, Breton, Ghislain, McEntee, Connor, Byer, Amanda, Trout, Jonathan D, ...
Correct daily phasing of transcription confers an adaptive advantage to almost all organisms, including higher plants. In this study, we describe a hypothesis-driven network discovery pipeline that...
A Morning-Specific Phytohormone Gene Expression Program underlying Rhythmic Plant Growth
Michael, Todd P, Breton, Ghislain, Hazen, Samuel P, Priest, Henry, Mockler, Todd C, Kay, Steve A, ...
Most organisms use daily light/dark cycles as timing cues to control many essential physiological processes. In plants, growth rates of the embryonic stem (hypocotyl) are maximal at different times...
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays
Hazen, Samuel P, Naef, Felix, Quisel, Tom, Gendron, Joshua M, Chen, Huaming, Ecker, Joseph R, ...
Whole genome tiling array analysis reveals the extent of transcriptional oscillation for both coding and non-coding genes in regulating Arabidopsis thaliana circadian rhythms