Fukuchi, Satoshi, Homma, Keiichi, Minezaki, Yoshiaki, Gojobori, Takashi, Nishikawa, Ken
Abstract Background In addition to structural domains, most eukaryotic proteins possess intrinsically disordered (ID) regions. Although ID regions often play important functional roles, their...
DDBJ dealing with mass data produced by the second generation sequencer (2009)
Sugawara, Hideaki, Ikeo, Kazuho, Fukuchi, Satoshi, Gojobori, Takashi, Tateno, Yoshio
DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp) collected and released 2 368 110 entries or 1 415 106 598 bases in the period from July 2007 to June 2008. The releases in this period...
Fukuchi, Satoshi, Homma, Keiichi, Sakamoto, Shigetaka, Sugawara, Hideaki, Tateno, Yoshio, Gojobori, Takashi, ...
The Genomes TO Protein Structures and Functions (GTOP) database (http://spock.genes.nig.ac.jp/~genome/gtop.html) freely provides an extensive collection of information on protein structures and...
Genome Informatics 14: 468--469 (2003) Estimation of the Number of Orphan Genes in the (2008)
Genome Sequences Satoshi, Satoshi Fukuchi, Ken Nishikawa
Introduction In annotations of genome sequences a considerable fraction of putative proteins are left without sequence similarity to known proteins. These genes or open reading frames (ORFs) have...
Protein Thermostabilization Requires a Fine-tuned Placement of Surface-charged Residues (2007)
You, Dong-Ju, Fukuchi, Satoshi, Nishikawa, Ken, Koga, Yuichi, Takano, Kazufumi, Kanaya, Shigenori
Using the information from the genome projects, recent comparative studies of thermostable proteins have revealed a certain trend of amino acid composition in which polar residues are scarce and...
Kosuge, Takehide, Abe, Takashi, Okido, Toshihisa, Tanaka, Naoto, Hirahata, Masaki, Maruyama, Yutaka, ...
A large number of complete microorganism genomes has been sequenced and submitted to the public database and then incorporated into our complete genome database, Genome Information Broker (GIB,...
Homma, Keiichi, Fukuchi, Satoshi, Nakamura, Yoji, Gojobori, Takashi, Nishikawa, Ken
The formation mechanism of operons remains unresolved: operons may form by rearrangements within a genome or by acquisition of genes from other species, that is, horizontal gene transfer (HGT). One...
Homma, Keiichi, Fukuchi, Satoshi, Nakamura, Yoji, Gojobori, Takashi, Nishikawa, Ken
The formation mechanism of operons remains controversial despite the proposal of many models. Although acquisition of genes from other species, horizontal gene transfer, is considered to occur,...
Takehide Kosuge, Takashi Abe, Toshihisa Okido, Naoto Tanaka, Masaki Hirahata, Yutaka Maruyama, ...
A large number of complete microorganism genomes has been sequenced and submitted to the public database and then incorporated into our complete genome database, Genome Information Broker (GIB,
Homma, Keiichi, Fukuchi, Satoshi, Nakamura, Yoji, Gojobori, Takashi, Nishikawa, Ken
The formation mechanism of operons remains unresolved: operons may form by rearrangements within a genome or by acquisition of genes from other species, i.e., horizontal gene transfer. One hindrance...
Kosuge, Takehide, Abe, Takashi, Okido, Toshihisa, Tanaka, Naoto, Hirahata, Masaki, Maruyama, Yutaka, ...
A large number of complete microorganism genomes has been sequenced and submitted to the public database and then incorporated into our complete genome database, Genome Information Broker (GIB,...
Homma, Keiichi, Fukuchi, Satoshi, Nakamura, Yoji, Gojobori, Takashi, Nishikawa, Ken
This paper was withdrawn by the authors.
Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones (2004)
Tadashi Imanishi, Takeshi Itoh, Yutaka Suzuki, Claire O'Donovan, Satoshi Fukuchi, Kanako O. Koyanagi, ...
An international team has systematically validated and annotated just over 21,000 human genes using full-length cDNA, thereby providing a valuable new resource for the human genetics community.
Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones (2004)
Tadashi Imanishi, Takeshi Itoh, Yutaka Suzuki, Claire O'Donovan, Satoshi Fukuchi, Kanako O. Koyanagi, ...
The human genome sequence defines our inherent biological potential; the realization of the biology encoded therein requires knowledge of the function of each gene. Currently, our knowledge in this...
Integrative annotation of 21,037 human genes validated by full-length cDNA clones (2004)
Imanishi, Tadashi, Itoh, Takeshi, Suzuki, Yutaka, O'Donovan, Claire, Fukuchi, Satoshi, Koyanagi, Kanako O., ...
This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the...
Nakashima, Hiroshi, Fukuchi, Satoshi, Nishikawa, Ken
It is known that in thermophiles the G+C content of ribosomal RNA linearly correlates with growth temperature, while that of genomic DNA does not. Although the G+C contents (singlet) of the...
GTOP: a database of protein structures predicted from genome sequences (2002)
Kawabata, Takeshi, Fukuchi, Satoshi, Homma, Keiichi, Ota, Motonori, Araki, Jiro, Ito, Takehiko, ...
Large-scale genome projects generate an unprecedented number of protein sequences, most of them are experimentally uncharacterized. Predicting the 3D structures of sequences provides important clues...
Horimoto, Katsuhisa, Fukuchi, Satoshi, Mori, Kentaro
Motivation: Following an extensive search for orthologous genes between the complete genomes from archaea and bacteria, the spatial association of the orthologs has been investigated in terms of...
GTOP: a database of protein structures predicted from genome sequences
Kawabata, Takeshi, Fukuchi, Satoshi, Homma, Keiichi, Ota, Motonori, Araki, Jiro, Ito, Takehiko, ...
Large-scale genome projects generate an unprecedented number of protein sequences, most of them are experimentally uncharacterized. Predicting the 3D structures of sequences provides important clues...
Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones
Imanishi, Tadashi, Itoh, Takeshi, Suzuki, Yutaka, O'Donovan, Claire, Fukuchi, Satoshi, Koyanagi, Kanako O, ...
The human genome sequence defines our inherent biological potential; the realization of the biology encoded therein requires knowledge of the function of each gene. Currently, our knowledge in this...
GTOP: a database of protein structures predicted from genome sequences
Kawabata, Takeshi, Fukuchi, Satoshi, Homma, Keiichi, Ota, Motonori, Araki, Jiro, Ito, Takehiko, ...
Large-scale genome projects generate an unprecedented number of protein sequences, most of them are experimentally uncharacterized. Predicting the 3D structures of sequences provides important clues...
Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones
Imanishi, Tadashi, Itoh, Takeshi, Suzuki, Yutaka, O'Donovan, Claire, Fukuchi, Satoshi, Koyanagi, Kanako O, ...
The human genome sequence defines our inherent biological potential; the realization of the biology encoded therein requires knowledge of the function of each gene. Currently, our knowledge in this...
DDBJ dealing with mass data produced by the second generation sequencer
Sugawara, Hideaki, Ikeo, Kazuho, Fukuchi, Satoshi, Gojobori, Takashi, Tateno, Yoshio
DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp) collected and released 2 368 110 entries or 1 415 106 598 bases in the period from July 2007 to June 2008. The releases in this period...
Fukuchi, Satoshi, Homma, Keiichi, Sakamoto, Shigetaka, Sugawara, Hideaki, Tateno, Yoshio, Gojobori, Takashi, ...
The Genomes TO Protein Structures and Functions (GTOP) database (http://spock.genes.nig.ac.jp/~genome/gtop.html) freely provides an extensive collection of information on protein structures and...