Optical mapping discerns genome wide DNA methylation profiles (2008)
Ananiev, Gene E, Goldstein, Steve, Runnheim, Rod, Forrest, Dan K, Zhou, Shiguo, Potamousis, Konstantinos, ...
Abstract Background Methylation of CpG dinucleotides is a fundamental mechanism of epigenetic regulation in eukaryotic genomes. Development of methods for rapid genome wide methylation profiling will...
Validation of rice genome sequence by optical mapping (2007)
Zhou, Shiguo, Bechner, Michael C, Place, Michael, Churas, Chris P, Pape, Louise, Leong, Sally A, ...
Abstract Background Rice feeds much of the world, and possesses the simplest genome analyzed to date within the grass family, making it an economically relevant model system for other cereal crops....
Whole-genome shotgun optical mapping of rhodospirillum rubrum (2004)
Reslewic, Susan, Zhou, Shiguo, Place, Mike, Zhang, Yaoping, Briska, Adam, Goldstein, Steve, ...
Rhodospirillum rubrum is a phototrophic purple non-sulfur bacterium known for its unique and well-studied nitrogen fixation and carbon monoxide oxidation systems, and as a source of hydrogen and...
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A Whole-Genome Shotgun Optical Map of Yersinia pestis Strain KIM
Zhou, Shiguo, Deng, Wen, Anantharaman, Thomas S., Lim, Alex, Dimalanta, Eileen T., Wang, Jun, ...
Yersinia pestis is the causative agent of the bubonic, septicemic, and pneumonic plagues (also known as black death) and has been responsible for recurrent devastating pandemics throughout history....
Genome Sequence of Yersinia pestis KIM†
Deng, Wen, Burland, Valerie, Plunkett III, Guy, Boutin, Adam, Mayhew, George F., Liss, Paul, ...
We present the complete genome sequence of Yersinia pestis KIM, the etiologic agent of bubonic and pneumonic plague. The strain KIM, biovar Mediaevalis, is associated with the second pandemic,...
The sequence and analysis of Trypanosoma brucei chromosome II
Ghedin, Elodie, Song, Jinming, MacLeod, Annette, Bringaud, Frederic, Larkin, Christopher, ...
We report here the sequence of chromosome II from Trypanosoma brucei, the causative agent of African sleeping sickness. The 1.2-Mb pairs encode about 470 predicted genes organised in 17 directional...
Zhou, Shiguo, Kvikstad, Erika, Kile, Andrew, Severin, Jessica, Forrest, Dan, Runnheim, Rod, ...
Rhodobacter sphaeroides 2.4.1 is a facultative photoheterotrophic bacterium with tremendous metabolic diversity, which has significantly contributed to our understanding of the molecular genetics of...
Single-Molecule Approach to Bacterial Genomic Comparisons via Optical Mapping†
Zhou, Shiguo, Kile, Andrew, Bechner, Michael, Place, Michael, Kvikstad, Erika, Deng, Wen, ...
Modern comparative genomics has been established, in part, by the sequencing and annotation of a broad range of microbial species. To gain further insights, new sequencing efforts are now dealing...
Whole-Genome Shotgun Optical Mapping of Rhodospirillum rubrum
Reslewic, Susan, Zhou, Shiguo, Place, Mike, Zhang, Yaoping, Briska, Adam, Goldstein, Steve, ...
Rhodospirillum rubrum is a phototrophic purple nonsulfur bacterium known for its unique and well-studied nitrogen fixation and carbon monoxide oxidation systems and as a source of hydrogen and...
The Genome of the Kinetoplastid Parasite, Leishmania major
Ivens, Alasdair C., Peacock, Christopher S., Worthey, Elizabeth A., Murphy, Lee, Aggarwal, Gautam, Berriman, Matthew, ...
A Whole-Genome Shotgun Optical Map of Yersinia pestis Strain KIM
Zhou, Shiguo, Deng, Wen, Anantharaman, Thomas S., Lim, Alex, Dimalanta, Eileen T., Wang, Jun, ...
Yersinia pestis is the causative agent of the bubonic, septicemic, and pneumonic plagues (also known as black death) and has been responsible for recurrent devastating pandemics throughout history....
Genome Sequence of Yersinia pestis KIM†
Deng, Wen, Burland, Valerie, Plunkett III, Guy, Boutin, Adam, Mayhew, George F., Liss, Paul, ...
We present the complete genome sequence of Yersinia pestis KIM, the etiologic agent of bubonic and pneumonic plague. The strain KIM, biovar Mediaevalis, is associated with the second pandemic,...
The sequence and analysis of Trypanosoma brucei chromosome II
Ghedin, Elodie, Song, Jinming, MacLeod, Annette, Bringaud, Frederic, Larkin, Christopher, ...
We report here the sequence of chromosome II from Trypanosoma brucei, the causative agent of African sleeping sickness. The 1.2-Mb pairs encode about 470 predicted genes organised in 17 directional...
Zhou, Shiguo, Kvikstad, Erika, Kile, Andrew, Severin, Jessica, Forrest, Dan, Runnheim, Rod, ...
Rhodobacter sphaeroides 2.4.1 is a facultative photoheterotrophic bacterium with tremendous metabolic diversity, which has significantly contributed to our understanding of the molecular genetics of...
Single-Molecule Approach to Bacterial Genomic Comparisons via Optical Mapping†
Zhou, Shiguo, Kile, Andrew, Bechner, Michael, Place, Michael, Kvikstad, Erika, Deng, Wen, ...
Modern comparative genomics has been established, in part, by the sequencing and annotation of a broad range of microbial species. To gain further insights, new sequencing efforts are now dealing...
Whole-Genome Shotgun Optical Mapping of Rhodospirillum rubrum
Reslewic, Susan, Zhou, Shiguo, Place, Mike, Zhang, Yaoping, Briska, Adam, Goldstein, Steve, ...
Rhodospirillum rubrum is a phototrophic purple nonsulfur bacterium known for its unique and well-studied nitrogen fixation and carbon monoxide oxidation systems and as a source of hydrogen and...
An algorithm for assembly of ordered restriction maps from single DNA molecules
Valouev, Anton, Schwartz, David C., Zhou, Shiguo, Waterman, Michael S.
The restriction mapping of a massive number of individual DNA molecules by optical mapping enables assembly of physical maps spanning mammalian and plant genomes; however, not through computational...