Socorro Gama-Castro

EcoCyc: A comprehensive view of Escherichia coli biology (2009)

Keseler, Ingrid M., Bonavides-Martínez, César, Collado-Vides, Julio, Gama-Castro, Socorro, Gunsalus, Robert P., Johnson, D. Aaron, ...

EcoCyc (http://EcoCyc.org) provides a comprehensive encyclopedia of Escherichia coli biology. EcoCyc integrates information about the genome, genes and gene products; the metabolic network; and the...

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation (2008)

Gama-Castro, Socorro, Jiménez-Jacinto, Verónica, Peralta-Gil, Martín, Santos-Zavaleta, Alberto, Peñaloza-Spinola, Mónica I., Contreras-Moreira, Bruno, ...

RegulonDB (http://regulondb.ccg.unam.mx/) is the primary reference database offering curated knowledge of the transcriptional regulatory network of Escherichia coli K12, currently the best-known...

Multidimensional annotation of the Escherichia coli K-12 genome (2007)

Karp, Peter D., Keseler, Ingrid M., Shearer, Alexander, Latendresse, Mario, Krummenacker, Markus, Paley, Suzanne M., ...

The annotation of the Escherichia coli K-12 genome in the EcoCyc database is one of the most accurate, complete and multidimensional genome annotations. Of the 4460 E. coli genes, EcoCyc assigns...

Multidimensional annotation of the Escherichia coli K-12 genome (2007)

Karp, Peter D, Keseler, Ingrid M, Santos-Zavaleta, Alberto, Peñaloza-Spínola, Mónica I, Bonavides-Martinez, Cesar, Ingraham, John, ...

The annotation of the Escherichia coli K-12 genome in the EcoCyc database is one of the most accurate, complete and multidimensional genome annotations. Of the 4460 E. coli genes, EcoCyc assigns...

The comprehensive updated regulatory network of Escherichia coliK-12 (2006)

Salgado, Heladia, Santos-Zavaleta, Alberto, Gama-Castro, Socorro, Peralta-Gil, Martín, Peñaloza-Spínola, Mónica I, Martínez-Antonio, Agustino, ...

Abstract Background Escherichia coli is the model organism for which our knowledge of its regulatory network is the most extensive. Over the last few years, our project has been collecting and...

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions (2006)

Salgado, Heladia, Gama-Castro, Socorro, Peralta-Gil, Martín, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, Santos-Zavaleta, Alberto, ...

RegulonDB is the internationally recognized reference database of Escherichia coli K-12 offering curated knowledge of the regulatory network and operon organization. It is currently the largest...

EcoCyc: a comprehensive database resource for Escherichia coli (2005)

Keseler, Ingrid M., Collado-Vides, Julio, Gama-Castro, Socorro, Ingraham, John, Paley, Suzanne, Paulsen, Ian T., ...

The EcoCyc database (http://EcoCyc.org/) is a comprehensive source of information on the biology of the prototypical model organism Escherichia coli K12. The mission for EcoCyc is to contain both...

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12 (2004)

Salgado, Heladia, Gama-Castro, Socorro, Martínez-Antonio, Agustino, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, Peralta-Gil, Martín, ...

RegulonDB is the primary database of the major international maintained curation of original literature with experimental knowledge about the elements and interactions of the network of...

The EcoCyc Database (2002)

Karp, Peter D., Riley, Monica, Saier, Milton, Paulsen, Ian T., Collado-Vides, Julio, Paley, Suzanne M., ...

EcoCyc is an organism-specific pathway/genome database that describes the metabolic and signal-transduction pathways of Escherichia coli, its enzymes, its transport proteins and its mechanisms of...

RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12 (2001)

Salgado, Heladia, Santos-Zavaleta, Alberto, Gama-Castro, Socorro, Millán-Zárate, Dulce, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, ...

RegulonDB is a database on mechanisms of transcription regulation and operon organization in Escherichia coli K-12. The current version has considerably increased numbers of regulatory elements such...

RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12 (2000)

Salgado, Heladia, Santos-Zavaleta, Alberto, Gama-Castro, Socorro, Millán-Zárate, Dulce, Blattner, Frederick R., Collado-Vides, Julio

RegulonDB is a database on transcription regulation and operon organization in Escherichia coli. The current version describes regulatory signals of transcription initiation, promoters, regulatory...

RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12

Salgado, Heladia, Santos-Zavaleta, Alberto, Gama-Castro, Socorro, Millán-Zárate, Dulce, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, ...

RegulonDB is a database on mechanisms of transcription regulation and operon organization in Escherichia coli K-12. The current version has considerably increased numbers of regulatory elements such...

The EcoCyc Database

Karp, Peter D., Riley, Monica, Saier, Milton, Paulsen, Ian T., Collado-Vides, Julio, Paley, Suzanne M., ...

EcoCyc is an organism-specific pathway/genome database that describes the metabolic and signal-transduction pathways of Escherichia coli, its enzymes, its transport proteins and its mechanisms of...

Azotobacter vinelandii Aldehyde Dehydrogenase Regulated by ς54: Role in Alcohol Catabolism and Encystment

Gama-Castro, Socorro, Núñez, Cinthia, Segura, Daniel, Moreno, Soledad, Guzmán, Josefina, Espín, Guadalupe

Encystment in Azotobacter vinelandii is induced by n-butanol or β-hydroxybutyrate (BHB). We identified a gene, encoding an aldehyde dehydrogenase, that was named aldA. An aldA mutation impaired...

RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12

Salgado, Heladia, Santos-Zavaleta, Alberto, Gama-Castro, Socorro, Millán-Zárate, Dulce, Blattner, Frederick R., Collado-Vides, Julio

RegulonDB is a database on transcription regulation and operon organization in Escherichia coli. The current version describes regulatory signals of transcription initiation, promoters, regulatory...

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

Salgado, Heladia, Gama-Castro, Socorro, Martínez-Antonio, Agustino, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, Peralta-Gil, Martín, ...

RegulonDB is the primary database of the major international maintained curation of original literature with experimental knowledge about the elements and interactions of the network of...

EcoCyc: a comprehensive database resource for Escherichia coli

Keseler, Ingrid M., Collado-Vides, Julio, Gama-Castro, Socorro, Ingraham, John, Paley, Suzanne, Paulsen, Ian T., ...

The EcoCyc database (http://EcoCyc.org/) is a comprehensive source of information on the biology of the prototypical model organism Escherichia coli K12. The mission for EcoCyc is to contain both...

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

Salgado, Heladia, Gama-Castro, Socorro, Peralta-Gil, Martín, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, Santos-Zavaleta, Alberto, ...

RegulonDB is the internationally recognized reference database of Escherichia coli K-12 offering curated knowledge of the regulatory network and operon organization. It is currently the largest...

RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12

Salgado, Heladia, Santos-Zavaleta, Alberto, Gama-Castro, Socorro, Millán-Zárate, Dulce, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, ...

RegulonDB is a database on mechanisms of transcription regulation and operon organization in Escherichia coli K-12. The current version has considerably increased numbers of regulatory elements such...

The EcoCyc Database

Karp, Peter D., Riley, Monica, Saier, Milton, Paulsen, Ian T., Collado-Vides, Julio, Paley, Suzanne M., ...

EcoCyc is an organism-specific pathway/genome database that describes the metabolic and signal-transduction pathways of Escherichia coli, its enzymes, its transport proteins and its mechanisms of...

Azotobacter vinelandii Aldehyde Dehydrogenase Regulated by ς54: Role in Alcohol Catabolism and Encystment

Gama-Castro, Socorro, Núñez, Cinthia, Segura, Daniel, Moreno, Soledad, Guzmán, Josefina, Espín, Guadalupe

Encystment in Azotobacter vinelandii is induced by n-butanol or β-hydroxybutyrate (BHB). We identified a gene, encoding an aldehyde dehydrogenase, that was named aldA. An aldA mutation impaired...

RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12

Salgado, Heladia, Santos-Zavaleta, Alberto, Gama-Castro, Socorro, Millán-Zárate, Dulce, Blattner, Frederick R., Collado-Vides, Julio

RegulonDB is a database on transcription regulation and operon organization in Escherichia coli. The current version describes regulatory signals of transcription initiation, promoters, regulatory...

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

Salgado, Heladia, Gama-Castro, Socorro, Martínez-Antonio, Agustino, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, Peralta-Gil, Martín, ...

RegulonDB is the primary database of the major international maintained curation of original literature with experimental knowledge about the elements and interactions of the network of...

EcoCyc: a comprehensive database resource for Escherichia coli

Keseler, Ingrid M., Collado-Vides, Julio, Gama-Castro, Socorro, Ingraham, John, Paley, Suzanne, Paulsen, Ian T., ...

The EcoCyc database (http://EcoCyc.org/) is a comprehensive source of information on the biology of the prototypical model organism Escherichia coli K12. The mission for EcoCyc is to contain both...

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

Salgado, Heladia, Gama-Castro, Socorro, Peralta-Gil, Martín, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, Santos-Zavaleta, Alberto, ...

RegulonDB is the internationally recognized reference database of Escherichia coli K-12 offering curated knowledge of the regulatory network and operon organization. It is currently the largest...

Multidimensional annotation of the Escherichia coli K-12 genome

Karp, Peter D., Keseler, Ingrid M., Shearer, Alexander, Latendresse, Mario, Krummenacker, Markus, Paley, Suzanne M., ...

The annotation of the Escherichia coli K-12 genome in the EcoCyc database is one of the most accurate, complete and multidimensional genome annotations. Of the 4460 E. coli genes, EcoCyc assigns...

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation

Gama-Castro, Socorro, Jiménez-Jacinto, Verónica, Peralta-Gil, Martín, Santos-Zavaleta, Alberto, Peñaloza-Spinola, Mónica I., Contreras-Moreira, Bruno, ...

RegulonDB (http://regulondb.ccg.unam.mx/) is the primary reference database offering curated knowledge of the transcriptional regulatory network of Escherichia coli K12, currently the best-known...

EcoCyc: A comprehensive view of Escherichia coli biology

Keseler, Ingrid M., Bonavides-Martínez, César, Collado-Vides, Julio, Gama-Castro, Socorro, Gunsalus, Robert P., Johnson, D. Aaron, ...

EcoCyc (http://EcoCyc.org) provides a comprehensive encyclopedia of Escherichia coli biology. EcoCyc integrates information about the genome, genes and gene products; the metabolic network; and the...