Peng, Zhi-yu, Zhou, Xin, Li, Linchuan, Yu, Xiangchun, Li, Hongjiang, Jiang, Zhiqiang, ...
Plant hormones are small organic molecules that influence almost every aspect of plant growth and development. Genetic and molecular studies have revealed a large number of genes that are involved in...
Huang, Moli, Wang, Yihua, Sun, Daochun, Zhu, Hongxia, Yin, Yanbing, Zhang, Wei, ...
Abstract Background Wnt/β-catenin pathway has critical roles in development and oncogenesis. Although significant progress has been made in understanding the downstream signaling cascade of this...
Genome comparison using Gene Ontology (GO) with statistical testing (2006)
Cai, Zhaotao, Mao, Xizeng, Li, Songgang, Wei, Liping
Abstract Background Automated comparison of complete sets of genes encoded in two genomes can provide insight on the genetic basis of differences in biological traits between species. Gene ontology...
Bmc Bioinformatics, Zhaotao Cai, Xizeng Mao, Songgang Li, Liping Wei, Liping Wei
Genome comparison using Gene Ontology (GO) with statistical
Nmpp: A usercustomized nimblegen microarray data processing pipeline (2006)
Xiangfeng Wang, Hang He, Lei Li, Runsheng Chen, Xing Wang Deng, Songgang Li
Summary: NMPP package is a bundle of user-customized tools based on established algorithms and methods to process selfdesigned NimbleGen microarray data. It features a command-linebased integrative...
NMPP: a user-customized NimbleGen microarray data processing pipeline (2006)
Wang, Xiangfeng, He, Hang, Li, Lei, Chen, Runsheng, Deng, Xing Wang, Li, Songgang
Summary: NMPP package is a bundle of user-customized tools based on established algorithms and methods to process self-designed NimbleGen microarray data. It features a command-line-based integrative...
Ruiqiang Li, Jia Ye, Songgang Li, Jing Wang, Yujun Han, Chen Ye, ...
We describe an algorithm, ReAS, to recover ancestral sequences for transposable elements (TEs) from the unassembled reads of a whole genome shotgun. The main assumptions are that these TEs must exist...
Ruiqiang Li, Jia Ye, Songgang Li, Jing Wang, Yujun Han, Chen Ye, ...
We describe an algorithm ReAS to recover ancestral sequences for transposable elements (TEs) from the unassembled reads of a whole genome shotgun. The main assumptions are that these TEs must exist...
Li, Lei, Wang, Xiangfeng, Xia, Mian, Stolc, Viktor, Su, Ning, Peng, Zhiyu, ...
No abstract available.
Li, Lei, Wang, Xiangfeng, Xia, Mian, Stolc, Viktor, Su, Ning, Peng, Zhiyu, ...
Abstract Background Sequencing and annotation of the genome of rice ( Oryza sativa ) have generated gene models in numbers that top all other fully sequenced species, with many lacking recognizable...
The Genomes of Oryza sativa: A History of Duplications (2005)
Jun Yu, Jun Wang, Wei Lin, Songgang Li, Heng Li, Jun Zhou, ...
Comparative genome sequencing of indica and japonica rice reveals that duplication of genes and genomic regions has played a major part in the evolution of grass genomes.
The Genomes of Oryza sativa: A History of Duplications (2005)
Jun Yu, Jun Wang, Wei Lin, Songgang Li, Heng Li, Jun Zhou, ...
We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, both with multimegabase contiguity, or almost 1,000-fold improvement over the drafts of 2002. Tested...
J: SilkDB: a knowledgebase for silkworm biology and genomics (2005)
Jing Wang, Qingyou Xia, Ximiao He, Mingtao Dai, Jue Ruan, Jie Chen, ...
The Silkworm Knowledgebase (SilkDB) is a webbased repository for the curation, integration and study of silkworm genetic and genomic data. With the recent accomplishment of a 6X draft genome sequence...
SPD--a web-based secreted protein database (2005)
Chen, Yunjia, Zhang, Yong, Yin, Yanbin, Gao, Ge, Li, Songgang, Jiang, Ying, ...
With the improved secreted protein prediction approach and comprehensive data sources, including Swiss-Prot, TrEMBL, RefSeq, Ensembl and CBI-Gene, we have constructed secretomes of human, mouse and...
SilkDB: a knowledgebase for silkworm biology and genomics (2005)
Wang, Jing, Xia, Qingyou, He, Ximiao, Dai, Mingtao, Ruan, Jue, Chen, Jie, ...
The Silkworm Knowledgebase (SilkDB) is a web-based repository for the curation, integration and study of silkworm genetic and genomic data. With the recent accomplishment of a ∼6X draft genome...
ChickVD: a sequence variation database for the chicken genome (2005)
Wang, Jing, He, Ximiao, Ruan, Jue, Dai, Mingtao, Chen, Jie, Zhang, Yong, ...
Working in parallel with the efforts to sequence the chicken (Gallus gallus) genome, the Beijing Genomics Institute led an international team of scientists from China, USA, UK, Sweden, The...
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms (2004)
Liu, Bin, Wang, Jun, Zhang, Yong, Yang, Xu, Zhang, Zengjin, ...
We describe a genetic variation map for the chicken genome containing 2.8 million single-nucleotide polymorphisms (SNPs). This map is based on a comparison of the sequences of three domestic chicken...
Zhao, Wenming, Wang, Jing, He, Ximiao, Huang, Xiaobing, Jiao, Yongzhi, Dai, Mingtao, ...
Rice is a major food staple for the world’s population and serves as a model species in cereal genome research. The Beijing Genomics Institute (BGI) has long been devoting itself to sequencing,...
RePS: A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun Data (2002)
Wang, Jun, Wong, Gane Ka-Shu, Ni, Peixiang, Han, Yujun, Huang, Xiangang, Zhang, Jianguo, ...
RePS: A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun Data
Wang, Jun, Wong, Gane Ka-Shu, Ni, Peixiang, Han, Yujun, Huang, Xiangang, Zhang, Jianguo, ...
We describe a sequence assembler, RePS (repeat-masked Phrap with scaffolding), that explicitly identifies exact 20mer repeats from the shotgun data and removes them prior to the assembly. The...
BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics
Zhao, Wenming, Wang, Jing, He, Ximiao, Huang, Xiaobing, Jiao, Yongzhi, Dai, Mingtao, ...
Rice is a major food staple for the world’s population and serves as a model species in cereal genome research. The Beijing Genomics Institute (BGI) has long been devoting itself to sequencing,...
ChickVD: a sequence variation database for the chicken genome
Wang, Jing, He, Ximiao, Ruan, Jue, Dai, Mingtao, Chen, Jie, Zhang, Yong, ...
Working in parallel with the efforts to sequence the chicken (Gallus gallus) genome, the Beijing Genomics Institute led an international team of scientists from China, USA, UK, Sweden, The...
SPD—a web-based secreted protein database
Chen, Yunjia, Zhang, Yong, Yin, Yanbin, Gao, Ge, Li, Songgang, Jiang, Ying, ...
With the improved secreted protein prediction approach and comprehensive data sources, including Swiss-Prot, TrEMBL, RefSeq, Ensembl and CBI-Gene, we have constructed secretomes of human, mouse and...
SilkDB: a knowledgebase for silkworm biology and genomics
Wang, Jing, Xia, Qingyou, He, Ximiao, Dai, Mingtao, Ruan, Jue, Chen, Jie, ...
The Silkworm Knowledgebase (SilkDB) is a web-based repository for the curation, integration and study of silkworm genetic and genomic data. With the recent accomplishment of a ∼6X draft genome...
The Genomes of Oryza sativa: A History of Duplications
Yu, Jun, Wang, Jun, Lin, Wei, Li, Songgang, Li, Heng, Zhou, Jun, ...
We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, both with multimegabase contiguity, or almost 1,000-fold improvement over the drafts of 2002. Tested...
Li, Lei, Wang, Xiangfeng, Xia, Mian, Stolc, Viktor, Su, Ning, Peng, Zhiyu, ...
A transcriptome analysis of chromosome 10 of 2 rice subspecies identifies 549 new gene models and gives experimental evidence for around 75% of the previously unsupported predicted genes.
Li, Ruiqiang, Ye, Jia, Li, Songgang, Wang, Jing, Han, Yujun, Ye, Chen, ...
We describe an algorithm, ReAS, to recover ancestral sequences for transposable elements (TEs) from the unassembled reads of a whole genome shotgun. The main assumptions are that these TEs must exist...
Li, Lei, Wang, Xiangfeng, Xia, Mian, Stolc, Viktor, Su, Ning, Peng, Zhiyu, ...
A correction to Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture by L Li, X Wang, M Xia, V Stolc, N Su, Z Peng, S...
RePS: A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun Data
Wang, Jun, Wong, Gane Ka-Shu, Ni, Peixiang, Han, Yujun, Huang, Xiangang, Zhang, Jianguo, ...
We describe a sequence assembler, RePS (repeat-masked Phrap with scaffolding), that explicitly identifies exact 20mer repeats from the shotgun data and removes them prior to the assembly. The...
BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics
Zhao, Wenming, Wang, Jing, He, Ximiao, Huang, Xiaobing, Jiao, Yongzhi, Dai, Mingtao, ...
Rice is a major food staple for the world’s population and serves as a model species in cereal genome research. The Beijing Genomics Institute (BGI) has long been devoting itself to sequencing,...
ChickVD: a sequence variation database for the chicken genome
Wang, Jing, He, Ximiao, Ruan, Jue, Dai, Mingtao, Chen, Jie, Zhang, Yong, ...
Working in parallel with the efforts to sequence the chicken (Gallus gallus) genome, the Beijing Genomics Institute led an international team of scientists from China, USA, UK, Sweden, The...
SPD—a web-based secreted protein database
Chen, Yunjia, Zhang, Yong, Yin, Yanbin, Gao, Ge, Li, Songgang, Jiang, Ying, ...
With the improved secreted protein prediction approach and comprehensive data sources, including Swiss-Prot, TrEMBL, RefSeq, Ensembl and CBI-Gene, we have constructed secretomes of human, mouse and...
SilkDB: a knowledgebase for silkworm biology and genomics
Wang, Jing, Xia, Qingyou, He, Ximiao, Dai, Mingtao, Ruan, Jue, Chen, Jie, ...
The Silkworm Knowledgebase (SilkDB) is a web-based repository for the curation, integration and study of silkworm genetic and genomic data. With the recent accomplishment of a ∼6X draft genome...
The Genomes of Oryza sativa: A History of Duplications
Yu, Jun, Wang, Jun, Lin, Wei, Li, Songgang, Li, Heng, Zhou, Jun, ...
We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, both with multimegabase contiguity, or almost 1,000-fold improvement over the drafts of 2002. Tested...
Li, Lei, Wang, Xiangfeng, Xia, Mian, Stolc, Viktor, Su, Ning, Peng, Zhiyu, ...
A transcriptome analysis of chromosome 10 of 2 rice subspecies identifies 549 new gene models and gives experimental evidence for around 75% of the previously unsupported predicted genes.
Li, Ruiqiang, Ye, Jia, Li, Songgang, Wang, Jing, Han, Yujun, Ye, Chen, ...
We describe an algorithm, ReAS, to recover ancestral sequences for transposable elements (TEs) from the unassembled reads of a whole genome shotgun. The main assumptions are that these TEs must exist...
Li, Lei, Wang, Xiangfeng, Xia, Mian, Stolc, Viktor, Su, Ning, Peng, Zhiyu, ...
A correction to Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture by L Li, X Wang, M Xia, V Stolc, N Su, Z Peng, S...
Li, Xueyong, Wang, Xiangfeng, He, Kun, Ma, Yeqin, Su, Ning, He, Hang, ...
We present high-resolution maps of DNA methylation and H3K4 di- and trimethylation of two entire chromosomes and two fully sequenced centromeres in rice (Oryza sativa) shoots and cultured cells. This...
Peng, Zhi-yu, Zhou, Xin, Li, Linchuan, Yu, Xiangchun, Li, Hongjiang, Jiang, Zhiqiang, ...
Plant hormones are small organic molecules that influence almost every aspect of plant growth and development. Genetic and molecular studies have revealed a large number of genes that are involved in...