Improving the quality of protein structure models by selecting from alignment alternatives (2006)
Sommer, Ingolf, Toppo, Stefano, Sander, Oliver, Lengauer, Thomas, Tosatto, Silvio CE
Abstract Background In the area of protein structure prediction, recently a lot of effort has gone into the development of Model Quality Assessment Programs (MQAPs). MQAPs distinguish high quality...
Improving the quality of protein structure models by selecting from alignment alternatives (2006)
Sommer, Ingolf, Toppo, Stefano, Sander, Oliver, Lengauer, Thomas, Tosatto, Silvio
Background In the area of protein structure prediction, recently a lot of effort has gone into the development of Model Quality Assessment Programs (MQAPs). MQAPs distinguish high quality protein...
Improving the quality of protein structure models by selecting from alignment alternatives (2006)
Sommer, Ingolf, Toppo, Stefano, Sander, Olivier, Lengauer, Thomas, Tosatto, Silvio CE
Background In the area of protein structure prediction, recently a lot of effort has gone into the development of Model Quality Assessment Programs (MQAPs). MQAPs distinguish high quality protein...
The SSEA server for protein secondary structure alignment (2005)
Fontana, Paolo, Bindewald, Eckart, Toppo, Stefano, Velasco, Riccardo, Valle, Giorgio, Tosatto, Silvio C. E.
Summary: We present a web server that computes alignments of protein secondary structures. The server supports both performing pairwise alignments and searching a secondary structure against a...
The SSEA server for protein secondary structure alignment (2004)
Fontana, Paolo, Bindewald, Eckart, Toppo, Stefano, Velasco, Riccardo, Valle, Giorgio, Tosatto, Silvio C. E.
Summary: We present a web server which computes alignments of protein secondary structures. The server supports both performing pairwise alignments and searching a secondary structure against a...
The SSEA server for protein secondary structure alignment (2004)
Fontana, Paolo, Bindewald, Eckart, Toppo, Stefano, Velasco, Riccardo, Valle, Giorgio, Tosatto, Silvio C. E.
Summary: We present a web server which computes alignments of protein secondary structures. The server supports both performing pairwise alignments and searching a secondary structure against a...
TRAIT (TRAnscript Integrated Table): a knowledgebase of human skeletal muscle transcripts (2003)
Toppo, Stefano, Cannata, Nicola, Fontana, Paolo, Romualdi, Chiara, Laveder, Paolo, Bertocco, Emanuela, ...
Summary: TRAIT is a knowledgebase integrating information on transcripts with related data from genome, proteins, ortholog genes and diseases. It was initially built as a system to manage an...
Romualdi, Chiara, Campanaro, Stefano, Campagna, Davide, Celegato, Barbara, Cannata, Nicola, Toppo, Stefano, ...
Large-scale parallel measurements of the expression of many thousands genes are now available with high-density array made with collections of cDNA fragments, or oligonucleotide corresponding to...
Borup, Rehannah HA, Toppo, Stefano, Chen, Yi-Wen, Teslovich, Tanya M, Lanfranchi, Gerolamo, Valle, Giorgio, ...
Abstract Background We describe the development, validation, and use of a highly redundant 120,000 oligonucleotide microarray (MuscleChip) containing 4,601 probe sets representing 1,150 known genes...
Borup, Rehannah HA, Toppo, Stefano, Chen, Yi-Wen, Teslovich, Tanya M, Lanfranchi, Gerolamo, Valle, Giorgio, ...
Background We describe the development, validation, and use of a highly redundant 120,000 oligonucleotide microarray (MuscleChip) containing 4,601 probe sets representing 1,150 known genes expressed...
Cannata, Nicola, Toppo, Stefano, Romualdi, Chiara, Valle, Giorgio
Motivation: Protein and DNA are generally represented by sequences of letters. In a number of circumstances simplified alphabets (where one or more letters would be represented by the same symbol)...
A two-step strategy for constructing specifically self-subtracted cDNA libraries (2002)
Laveder, Paolo, De Pittà, Cristiano, Toppo, Stefano, Valle, Giorgio, Lanfranchi, Gerolamo
We have developed a new strategy for producing subtracted cDNA libraries that is optimized for connective and epithelial tissues, where a few exceptionally abundant (super-prevalent) RNA species...
A Comprehensive, High-Resolution Genomic Transcript Map of Human Skeletal Muscle (1998)
Bortoluzzi, Stefania, Rampoldi, Luca, Simionati, Barbara, Zimbello, Rosanna, Barbon, Alessandro, D'Alessi, Fabio, ...
A two-step strategy for constructing specifically self-subtracted cDNA libraries
Laveder, Paolo, De Pittà, Cristiano, Toppo, Stefano, Valle, Giorgio, Lanfranchi, Gerolamo
We have developed a new strategy for producing subtracted cDNA libraries that is optimized for connective and epithelial tissues, where a few exceptionally abundant (super-prevalent) RNA species...
Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs
Borup, Rehannah HA, Toppo, Stefano, Chen, Yi-Wen, Teslovich, Tanya M, Lanfranchi, Gerolamo, Valle, Giorgio, ...
A Comprehensive, High-Resolution Genomic Transcript Map of Human Skeletal Muscle
Bortoluzzi, Stefania, Rampoldi, Luca, Simionati, Barbara, Zimbello, Rosanna, Barbon, Alessandro, D’Alessi, Fabio, ...
We present the Human Muscle Gene Map (HMGM), the first comprehensive and updated high-resolution expression map of human skeletal muscle. The 1078 entries of the map were obtained by merging data...
Improving the quality of protein structure models by selecting from alignment alternatives
Sommer, Ingolf, Toppo, Stefano, Sander, Oliver, Lengauer, Thomas, Tosatto, Silvio CE
A two-step strategy for constructing specifically self-subtracted cDNA libraries
Laveder, Paolo, De Pittà, Cristiano, Toppo, Stefano, Valle, Giorgio, Lanfranchi, Gerolamo
We have developed a new strategy for producing subtracted cDNA libraries that is optimized for connective and epithelial tissues, where a few exceptionally abundant (super-prevalent) RNA species...
Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs
Borup, Rehannah HA, Toppo, Stefano, Chen, Yi-Wen, Teslovich, Tanya M, Lanfranchi, Gerolamo, Valle, Giorgio, ...
A Comprehensive, High-Resolution Genomic Transcript Map of Human Skeletal Muscle
Bortoluzzi, Stefania, Rampoldi, Luca, Simionati, Barbara, Zimbello, Rosanna, Barbon, Alessandro, D’Alessi, Fabio, ...
We present the Human Muscle Gene Map (HMGM), the first comprehensive and updated high-resolution expression map of human skeletal muscle. The 1078 entries of the map were obtained by merging data...
Improving the quality of protein structure models by selecting from alignment alternatives
Sommer, Ingolf, Toppo, Stefano, Sander, Oliver, Lengauer, Thomas, Tosatto, Silvio CE