Stephane Flibotte

Experimental analysis of oligonucleotide microarray design criteria to detect deletions by comparative genomic hybridization (2008)

Flibotte, Stephane, Moerman, Donald G

Abstract Background Microarray comparative genomic hybridization (CGH) is currently one of the most powerful techniques to measure DNA copy number in large genomes. In humans, microarray CGH is...

Bioinformatics Advance Access published February 10, 2004 Automated ordering of fingerprinted clones (2008)

Stephane Flibotte, Readman Chiu, Chris Fjell, Martin Krzywinski, Jacqueline E, Heesun Shin, ...

Motivation: A considerable amount of human intervention is currently required to produce high quality fingerprint based physical maps for genomic studies. Results: An algorithm has been developed and...

Transcription of foreign DNA in Escherichia coli (2008)

Warren, René L., Freeman, John D., Levesque, Roger C., Smailus, Duane E., Flibotte, Stephane, Holt, Robert A.

Propagation of heterologous DNA in E. coli host cells is central to molecular biology. DNA constructs are often engineered for expression of recombinant protein in E. coli, but the extent of...

Oligonucleotide Array Comparative Genomic Hybridization (oaCGH) based characterization of genetic deficiencies as an aid to gene mapping in Caenorhabditis elegans (2007)

Jones, Martin R, Maydan, Jason S, Flibotte, Stephane, Moerman, Donald G, Baillie, David L

Abstract Background: A collection of genetic deficiencies covering over 70% of the Caenorhabditis elegans genome exists, however the application of these valuable biological tools has been limited...

Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data (2007)

Baross, Ágnes, Delaney, Allen D, Li, H Irene, Nayar, Tarun, Flibotte, Stephane, Qian, Hong, ...

Abstract Background Genomic deletions and duplications are important in the pathogenesis of diseases, such as cancer and mental retardation, and have recently been shown to occur frequently in...

Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization (2007)

Maydan, Jason S., Flibotte, Stephane, Edgley, Mark L., Lau, Joanne, Selzer, Rebecca R., Richmond, Todd A., ...

We have developed array Comparative Genomic Hybridization for Caenorhabditis elegans as a means of screening for novel induced deletions in this organism. We designed three microarrays consisting of...

DNA copy-number analysis in bipolar disorder and schizophrenia reveals aberrations in genes involved in glutamate signaling (2006)

Wilson, Gary M., Flibotte, Stephane, Chopra, Vikramjit, Melnyk, Brianna L., Honer, William G., Holt, Robert A.

Using bacterial artificial chromosome (BAC) array comparative genome hybridization (aCGH) at ∼1.4 Mbp resolution, we screened post-mortem brain DNA from bipolar disorder cases, schizophrenia cases...

DNA copy-number analysis in bipolar disorder and schizophrenia reveals aberrations in genes involved in glutamate signaling (2006)

Wilson, Gary M., Flibotte, Stephane, Chopra, Vikramjit, Melnyk, Brianna L., Honer, William G., Holt, Robert A.

Using bacterial artificial chromosome (BAC) array comparative genome hybridization (aCGH) at ∼1.4 Mbp resolution, we screened post-mortem brain DNA from bipolar disorder cases, schizophrenia...

Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla (2005)

Wilson, Gary M., Flibotte, Stephane, Missirlis, Perseus I., Marra, Marco A., Jones, Steven, Thornton, Kevin, ...

Duplication of chromosomal segments and associated genes is thought to be a primary mechanism for generating evolutionary novelty. By comparative genome hybridization using a full-coverage (tiling)...

Automated ordering of fingerprinted clones (2004)

Flibotte, Stephane, Chiu, Readman, Fjell, Chris, Krzywinski, Martin, Schein, Jacqueline E., Shin, Heesun, ...

Motivation: A considerable amount of human intervention is currently required to produce high quality fingerprint based physical maps for genomic studies. Results: An algorithm has been developed and...

Automated ordering of fingerprinted clones (2004)

Flibotte, Stephane, Chiu, Readman, Fjell, Chris, Krzywinski, Martin, Schein, Jacqueline E., Shin, Heesun, ...

Motivation: A considerable amount of human intervention is currently required to produce high-quality fingerprint-based physical maps for genomic studies. Results: An algorithm has been developed and...

Automated ordering of fingerprinted clones (2004)

Flibotte, Stephane, Chiu, Readman, Fjell, Chris, Krzywinski, Martin, Schein, Jacqueline E., Shin, Heesun, ...

Motivation: A considerable amount of human intervention is currently required to produce high quality fingerprint based physical maps for genomic studies. Results: An algorithm has been developed and...

Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla

Wilson, Gary M., Flibotte, Stephane, Missirlis, Perseus I., Marra, Marco A., Jones, Steven, Thornton, Kevin, ...

Duplication of chromosomal segments and associated genes is thought to be a primary mechanism for generating evolutionary novelty. By comparative genome hybridization using a full-coverage (tiling)...

Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla

Wilson, Gary M., Flibotte, Stephane, Missirlis, Perseus I., Marra, Marco A., Jones, Steven, Thornton, Kevin, ...

Duplication of chromosomal segments and associated genes is thought to be a primary mechanism for generating evolutionary novelty. By comparative genome hybridization using a full-coverage (tiling)...

Oligonucleotide Microarray Analysis of Genomic Imbalance in Children with Mental Retardation

Friedman, J. M., Baross, Ágnes, Delaney, Allen D., Ally, Adrian, Arbour, Laura, Asano, Jennifer, ...

The cause of mental retardation in one-third to one-half of all affected individuals is unknown. Microscopically detectable chromosomal abnormalities are the most frequently recognized cause, but...

Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization

Maydan, Jason S., Flibotte, Stephane, Edgley, Mark L., Lau, Joanne, Selzer, Rebecca R., Richmond, Todd A., ...

We have developed array Comparative Genomic Hybridization for Caenorhabditis elegans as a means of screening for novel induced deletions in this organism. We designed three microarrays consisting of...

Rapid High Resolution Single Nucleotide Polymorphism–Comparative Genome Hybridization Mapping in Caenorhabditis elegans

Flibotte, Stephane, Edgley, Mark L., Maydan, Jason, Taylor, Jon, Zapf, Rick, Waterston, Robert, ...

We have developed a significantly improved and simplified method for high-resolution mapping of phenotypic traits in Caenorhabditis elegans using a combination of single nucleotide polymorphisms...

Transcription of foreign DNA in Escherichia coli

Warren, René L., Freeman, John D., Levesque, Roger C., Smailus, Duane E., Flibotte, Stephane, Holt, Robert A.

Propagation of heterologous DNA in E. coli host cells is central to molecular biology. DNA constructs are often engineered for expression of recombinant protein in E. coli, but the extent of...

De Novo Identification of Single Nucleotide Mutations in Caenorhabditis elegans Using Array Comparative Genomic Hybridization

Maydan, Jason S., Okada, H. Mark, Flibotte, Stephane, Edgley, Mark L., Moerman, Donald G.

Array comparative genomic hybridization (aCGH) has been used primarily to detect copy-number variants between two genomes. Here we report using aCGH to detect single nucleotide mutations on...

Cis-regulatory Mutations in the Caenorhabditis elegans Homeobox Gene Locus cog-1 Affect Neuronal Development

O'Meara, M. Maggie, Bigelow, Henry, Flibotte, Stephane, Etchberger, John F., Moerman, Donald G., Hobert, Oliver

We apply here comparative genome hybridization as a novel tool to identify the molecular lesion in two Caenorhabditis elegans mutant strains that affect a neuronal cell fate decision. The phenotype...