Junttila, Sini, Lim, Kean-Jin, Rudd, Stephen
Abstract Background The reindeer lichen is the product of a mutualistic relationship between a fungus and an algae. Lichen demonstrate a remarkable capacity to tolerate dehydration. This tolerance is...
Microarray analysis identifies candidate genes for key roles in coral development (2008)
Grasso, Lauretta C, Maindonald, John, Rudd, Stephen, Hayward, David C, Saint, Robert, Miller, David J, ...
Abstract Background Anthozoan cnidarians are amongst the simplest animals at the tissue level of organization, but are surprisingly complex and vertebrate-like in terms of gene repertoire. As major...
K: PlantMarkers--a database of predicted molecular markers from plants (2008)
Stephen Rudd, Heiko Schoof, Klaus Mayer
from plants
Pauly, Barbara, Lasi, Margherita, MacKintosh, Carol, Morrice, Nick, Imhof, Axel, Regula, Jörg, ...
Abstract Background 14-3-3 proteins have been implicated in many signalling mechanisms due to their interaction with Ser/Thr phosphorylated target proteins. They are evolutionarily well conserved in...
A wing expressed sequence tag resource for Bicyclus anynanabutterflies, an evo-devo model (2006)
Beldade, Patrícia, Rudd, Stephen, Gruber, Jonathan D, Long, Anthony D
Abstract Background Butterfly wing color patterns are a key model for integrating evolutionary developmental biology and the study of adaptive morphological evolution. Yet, despite the biological,...
Igor V. Tetko, Georg Haberer, Stephen Rudd, Blake Meyers, Hans-Werner Mewes
Scaffold/matrix attachment regions (S/MARs) are essential for structural organization of the chromatin within the nucleus and serve as anchors of chromatin loop domains. A significant fraction of...
Gene expression and metabolite profiling of Populus euphraticagrowing in the Negev desert (2005)
Brosché, Mikael, Vinocur, Basia, Alatalo, Edward R, Lamminmäki, Airi, Teichmann, Thomas, Ottow, Eric A, ...
Abstract Background Plants growing in their natural habitat represent a valuable resource for elucidating mechanisms of acclimation to environmental constraints. Populus euphratica is a salt-tolerant...
Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians (2005)
Technau, Ulrich, Rudd, Stephen, Maxwell, Peter, Gordon, Paul M.K., Saina, Michael, Grasso, Lauretta C., ...
Cnidarians are among the simplest extant animals; however EST analyses reveal that they have a remarkably high level of genetic complexity. In this article, we show that the full diversity of...
Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians (2005)
Technau, Ulrich, Rudd, Stephen, Maxwell, Peter, Gordon, Paul M.K., Saina, Michael, Grasso, Lauretta C., ...
Cnidarians are among the simplest extant animals; however EST analyses reveal that they have a remarkably high level of genetic complexity. In this article, we show that the full diversity of...
Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians (2005)
Technau, Ulrich, Rudd, Stephen, Maxwell, Peter, Gordon, Paul M. K., Saina, Michael, Grasso, Lauretta C., ...
Cnidarians are among the simplest extant animals; however EST analyses reveal that they have a remarkably high level of genetic complexity. In this article, we show that the full diversity of...
Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians (2005)
Technau, Ulrich, Rudd, Stephen, Maxwell, Peter, Gordon, Paul M. K., Saina, Michael, Grasso, Lauretta C., ...
Cnidarians are among the simplest extant animals; however EST analyses reveal that they have a remarkably high level of genetic complexity. In this article, we show that the full diversity of...
Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians (2005)
Technau, Ulrich, Rudd, Stephen, Maxwell, Peter, Gordon, Paul M.K., Saina, Michael, Grasso, Lauretta C., ...
Cnidarians are among the simplest extant animals; however EST analyses reveal that they have a remarkably high level of genetic complexity. In this article, we show that the full diversity of...
Gene expression and metabolite profiling of Populus euphratica growing in the Negev desert (2005)
Mikael Brosché, Basia Vinocur, Edward R Alatalo, Airi Lamminmäki, Thomas Teichmann, Eric A Ottow, ...
The electronic version of this article is the complete one and can be
The public expressed sequence tag collections are continually being enriched with high-quality sequences that represent an ever-expanding range of taxonomically diverse plant species. While these...
PlantMarkers--a database of predicted molecular markers from plants (2005)
Rudd, Stephen, Schoof, Heiko, Mayer, Klaus
Molecular markers are required in a broad spectrum of gene screening approaches, ranging from gene-mapping within traditional ‘forward’-genetics approaches through QTL identification studies to...
The identification of the genes that participate at the biological interface of two species remains critical to our understanding of the mechanisms of disease resistance, disease susceptibility and...
Laitinen, Roosa A.E., Immanen, Juha, Auvinen, Petri, Rudd, Stephen, Alatalo, Edward, Paulin, Lars, ...
Development of composite inflorescences in the plant family Asteraceae has features that cannot be studied in the traditional model plants for flower development. In Gerbera hybrida, inflorescences...
Friedel, Caroline C., Jahn, Katharina H. V., Sommer, Selina, Rudd, Stephen, Mewes, Hans W., Tetko, Igor V.
Motivation: Discovery of host and pathogen genes expressed at the plant–pathogen interface often requires the construction of mixed libraries that contain sequences from both genomes. Sequence...
Friedel, Caroline C., Jahn, Katharina H. V., Sommer, Selina, Rudd, Stephen, Mewes, Hans W., Tetko, Igor V.
Motivation: Discovery of host and pathogen genes expressed at the plant-pathogen interface often requires the construction of mixed libraries that contain sequences from both genomes. Sequence...
Characterization of the Maize Endosperm Transcriptome and Its Comparison to the Rice Genome (2004)
Lai, Jinsheng, Dey, Nrisingha, Kim, Cheol-Soo, Bharti, Arvind K., Rudd, Stephen, Mayer, Klaus F.X., ...
The cereal endosperm is a major organ of the seed and an important component of the world's food supply. To understand the development and physiology of the endosperm of cereal seeds, we focused on...
Friedel, Caroline C., Jahn, Katharina H. V., Sommer, Selina, Rudd, Stephen, Mewes, Hans W., Tetko, Igor V.
Motivation: Discovery of host and pathogen genes expressed at the plant-pathogen interface often requires the construction of mixed libraries that contain sequences from both genomes. Sequence...
Sputnik: a database platform for comparative plant genomics (2003)
Stephen Rudd, Hans-werner Mewes
Two million plant ESTs, from 20 different plant species, and totalling more than one 1000 Mbp of DNA sequence, represents a formidable transcriptomic resource. Sputnik uses the potential of this...
Sputnik: a database platform for comparative plant genomics (2003)
Rudd, Stephen, Mewes, Hans-Werner, Mayer, Klaus F.X.
Two million plant ESTs, from 20 different plant species, and totalling more than one 1000 Mbp of DNA sequence, represents a formidable transcriptomic resource. Sputnik uses the potential of...
Schoof, Heiko, Zaccaria, Paolo, Gundlach, Heidrun, Lemcke, Kai, Rudd, Stephen, Kolesov, Grigory, ...
Arabidopsis thaliana is the first plant for which the complete genome has been sequenced and published. Annotation of complex eukaryotic genomes requires more than the assignment of genetic elements...
Arabidopsis genome analysis as exemplified by analysis of chromosome 4 (2000)
Mayer, Klaus F.X., Lemcke, Kai, Rudd, Stephen, Zaccaria, Paolo, Schüller, Christine M.
During the last decade the small cruciferous plant Arabidopsis thaliana has become a model organism for flowering plants. Sequencing and analysis of the Arabidopsis genome is nearing completion....
Schoof, Heiko, Zaccaria, Paolo, Gundlach, Heidrun, Lemcke, Kai, Rudd, Stephen, Kolesov, Grigory, ...
Arabidopsis thaliana is the first plant for which the complete genome has been sequenced and published. Annotation of complex eukaryotic genomes requires more than the assignment of genetic elements...
Sputnik: a database platform for comparative plant genomics
Rudd, Stephen, Mewes, Hans-Werner, Mayer, Klaus F.X.
Two million plant ESTs, from 20 different plant species, and totalling more than one 1000 Mbp of DNA sequence, represents a formidable transcriptomic resource. Sputnik uses the potential of this...
Rudd, Stephen, Frisch, Matthias, Grote, Korbinian, Meyers, Blake C., Mayer, Klaus, Werner, Thomas
We carried out a genome-wide prediction of scaffold/matrix attachment regions (S/MARs) in Arabidopsis. Results indicate no uneven distribution on the chromosomal level but a clear underrepresentation...
Characterization of the Maize Endosperm Transcriptome and Its Comparison to the Rice Genome
Lai, Jinsheng, Dey, Nrisingha, Kim, Cheol-Soo, Bharti, Arvind K., Rudd, Stephen, Mayer, Klaus F.X., ...
The cereal endosperm is a major organ of the seed and an important component of the world's food supply. To understand the development and physiology of the endosperm of cereal seeds, we focused on...
The public expressed sequence tag collections are continually being enriched with high-quality sequences that represent an ever-expanding range of taxonomically diverse plant species. While these...
PlantMarkers—a database of predicted molecular markers from plants
Rudd, Stephen, Schoof, Heiko, Mayer, Klaus
Molecular markers are required in a broad spectrum of gene screening approaches, ranging from gene-mapping within traditional ‘forward’-genetics approaches through QTL identification studies to...
Laitinen, Roosa A.E., Immanen, Juha, Auvinen, Petri, Rudd, Stephen, Alatalo, Edward, Paulin, Lars, ...
Development of composite inflorescences in the plant family Asteraceae has features that cannot be studied in the traditional model plants for flower development. In Gerbera hybrida, inflorescences...
Éclair—a web service for unravelling species origin of sequences sampled from mixed host interfaces
The identification of the genes that participate at the biological interface of two species remains critical to our understanding of the mechanisms of disease resistance, disease susceptibility and...
Gene expression and metabolite profiling of Populus euphratica growing in the Negev desert
Brosché, Mikael, Vinocur, Basia, Alatalo, Edward R, Lamminmäki, Airi, Teichmann, Thomas, Ottow, Eric A, ...
A Populus euphratica DNA microarray was constructed and used to analyze gene expression in trees growing in the desert. P. euphratica is shown to express a set of genes that is different from other...
Tetko, Igor V, Haberer, Georg, Rudd, Stephen, Meyers, Blake, Mewes, Hans-Werner, Mayer, Klaus F. X
Scaffold/matrix attachment regions (S/MARs) are essential for structural organization of the chromatin within the nucleus and serve as anchors of chromatin loop domains. A significant fraction of...
Tetko, Igor V, Haberer, Georg, Rudd, Stephen, Meyers, Blake C, Mewes, Hans-Werner, Mayer, Klaus F. X
A wing expressed sequence tag resource for Bicyclus anynana butterflies, an evo-devo model
Beldade, Patrícia, Rudd, Stephen, Gruber, Jonathan D, Long, Anthony D
Schoof, Heiko, Zaccaria, Paolo, Gundlach, Heidrun, Lemcke, Kai, Rudd, Stephen, Kolesov, Grigory, ...
Arabidopsis thaliana is the first plant for which the complete genome has been sequenced and published. Annotation of complex eukaryotic genomes requires more than the assignment of genetic elements...
Sputnik: a database platform for comparative plant genomics
Rudd, Stephen, Mewes, Hans-Werner, Mayer, Klaus F.X.
Two million plant ESTs, from 20 different plant species, and totalling more than one 1000 Mbp of DNA sequence, represents a formidable transcriptomic resource. Sputnik uses the potential of this...
Rudd, Stephen, Frisch, Matthias, Grote, Korbinian, Meyers, Blake C., Mayer, Klaus, Werner, Thomas
We carried out a genome-wide prediction of scaffold/matrix attachment regions (S/MARs) in Arabidopsis. Results indicate no uneven distribution on the chromosomal level but a clear underrepresentation...
Characterization of the Maize Endosperm Transcriptome and Its Comparison to the Rice Genome
Lai, Jinsheng, Dey, Nrisingha, Kim, Cheol-Soo, Bharti, Arvind K., Rudd, Stephen, Mayer, Klaus F.X., ...
The cereal endosperm is a major organ of the seed and an important component of the world's food supply. To understand the development and physiology of the endosperm of cereal seeds, we focused on...
The public expressed sequence tag collections are continually being enriched with high-quality sequences that represent an ever-expanding range of taxonomically diverse plant species. While these...
PlantMarkers—a database of predicted molecular markers from plants
Rudd, Stephen, Schoof, Heiko, Mayer, Klaus
Molecular markers are required in a broad spectrum of gene screening approaches, ranging from gene-mapping within traditional ‘forward’-genetics approaches through QTL identification studies to...
Laitinen, Roosa A.E., Immanen, Juha, Auvinen, Petri, Rudd, Stephen, Alatalo, Edward, Paulin, Lars, ...
Development of composite inflorescences in the plant family Asteraceae has features that cannot be studied in the traditional model plants for flower development. In Gerbera hybrida, inflorescences...
Éclair—a web service for unravelling species origin of sequences sampled from mixed host interfaces
The identification of the genes that participate at the biological interface of two species remains critical to our understanding of the mechanisms of disease resistance, disease susceptibility and...
Gene expression and metabolite profiling of Populus euphratica growing in the Negev desert
Brosché, Mikael, Vinocur, Basia, Alatalo, Edward R, Lamminmäki, Airi, Teichmann, Thomas, Ottow, Eric A, ...
A Populus euphratica DNA microarray was constructed and used to analyze gene expression in trees growing in the desert. P. euphratica is shown to express a set of genes that is different from other...
Tetko, Igor V, Haberer, Georg, Rudd, Stephen, Meyers, Blake, Mewes, Hans-Werner, Mayer, Klaus F. X
Scaffold/matrix attachment regions (S/MARs) are essential for structural organization of the chromatin within the nucleus and serve as anchors of chromatin loop domains. A significant fraction of...
Tetko, Igor V, Haberer, Georg, Rudd, Stephen, Meyers, Blake C, Mewes, Hans-Werner, Mayer, Klaus F. X
A wing expressed sequence tag resource for Bicyclus anynana butterflies, an evo-devo model
Beldade, Patrícia, Rudd, Stephen, Gruber, Jonathan D, Long, Anthony D