Susan M. Sunkin

Quantitative methods for genome-scale analysis of in situhybridization and correlation with microarray data (2008)

Lee, Chang-Kyu, Sunkin, Susan M, Kuan, Chihchau, Thompson, Carol L, Pathak, Sayan, Ng, Lydia, ...

Abstract With the emergence of genome-wide colorimetric in situ hybridization (ISH) data sets such as the Allen Brain Atlas, it is important to understand the relationship between this gene...

Identification of a Putative Precursor to the Major Surface Glycoprotein of Pneumocystis carinii

Sunkin, Susan M., Linke, Michael J., McCormack, Francis X., Walzer, Peter D., Stringer, James R.

The major surface glycoprotein (MSG) of Pneumocystis carinii f. sp. carinii is a family of proteins encoded by a family of heterogeneous genes. Messenger RNAs encoding different MSGs each begin with...

Expression, Structure, and Location of Epitopes of the Major Surface Glycoprotein of Pneumocystis carinii f. sp. carinii

Linke, Michael J., Sunkin, Susan M., Andrews, Ryan P., Stringer, James R., Walzer, Peter D.

The major surface glycoprotein (MSG) of Pneumocystis carinii f. sp. carinii consists of a heterogeneous family of proteins that are encoded by approximately 100 unique genes. A genomic expression...

Leishmania major chromosome 3 contains two long convergent polycistronic gene clusters separated by a tRNA gene

Worthey, E. A., Martinez-Calvillo, Santiago, Schnaufer, Achim, Aggarwal, Gautam, Cawthra, Jason, Fazelinia, Gholam, ...

Leishmania parasites (order Kinetoplastida, family Trypanosomatidae) cause a spectrum of human diseases ranging from asymptomatic to lethal. The ∼33.6 Mb genome is distributed among 36 chromosome...

Identification of a Putative Precursor to the Major Surface Glycoprotein of Pneumocystis carinii

Sunkin, Susan M., Linke, Michael J., McCormack, Francis X., Walzer, Peter D., Stringer, James R.

The major surface glycoprotein (MSG) of Pneumocystis carinii f. sp. carinii is a family of proteins encoded by a family of heterogeneous genes. Messenger RNAs encoding different MSGs each begin with...

Expression, Structure, and Location of Epitopes of the Major Surface Glycoprotein of Pneumocystis carinii f. sp. carinii

Linke, Michael J., Sunkin, Susan M., Andrews, Ryan P., Stringer, James R., Walzer, Peter D.

The major surface glycoprotein (MSG) of Pneumocystis carinii f. sp. carinii consists of a heterogeneous family of proteins that are encoded by approximately 100 unique genes. A genomic expression...

Leishmania major chromosome 3 contains two long convergent polycistronic gene clusters separated by a tRNA gene

Worthey, E. A., Martinez-Calvillo, Santiago, Schnaufer, Achim, Aggarwal, Gautam, Cawthra, Jason, Fazelinia, Gholam, ...

Leishmania parasites (order Kinetoplastida, family Trypanosomatidae) cause a spectrum of human diseases ranging from asymptomatic to lethal. The ∼33.6 Mb genome is distributed among 36 chromosome...

Quantitative methods for genome-scale analysis of in situ hybridization and correlation with microarray data

Lee, Chang-Kyu, Sunkin, Susan M, Kuan, Chihchau, Thompson, Carol L, Pathak, Sayan, Ng, Lydia, ...

This study introduces a novel method for standardized relative quantification of colorimetric in situ hybridization signal that enables a large-scale cross-platform expression level comparison of in...

Specific expression of long noncoding RNAs in the mouse brain

Mercer, Tim R., Dinger, Marcel E., Sunkin, Susan M., Mehler, Mark F., Mattick, John S.

A major proportion of the mammalian transcriptome comprises long RNAs that have little or no protein-coding capacity (ncRNAs). Only a handful of such transcripts have been examined in detail, and it...