SNP finding in pig mitochondrial ESTs (2008)
Karsten Scheibye-alsing, Susanna Cirera, Michael J. Gilchrist
SUMMARY: The sino-danish pig genome project produced 685,851 ESTs (Expressed Sequence Tags)(Gorodkin et al. 2007), of which 41,499 originates from the mitochondrial genome. In this study the...
Bruun, Camilla S, Jørgensen, Claus B, Bay, Lene, Cirera, Susanna, Jensen, Henrik E, Leifsson, Páll S, ...
Abstract Background A pig phenotype characterized by juvenile hairlessness, thin skin and age dependent lung emphysema has been discovered in a Danish pig herd. The trait shows autosomal co-dominant...
Scheibye-Alsing, Karsten, Cirera, Susanna, Gilchrist, Michael J, Fredholm, Merete, Gorodkin, Jan
Abstract Background The mitochondria are involved in many basic functions in cells of vertebrates, and can be considered the power generator of the cell. Though the mitochondria have been extensively...
Proschowsky, Helle Friis, Flagstad, Annette, Cirera, Susanna, Joergensen, Claus B., Fredholm, Merete
The presence of a recessive inherited muscle disease in Old Danish Pointing Dogs has been well known for years. Comparisons of this disease with myasthenic diseases of other dog breeds and humans...
Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR (2007)
Nygard, Ann-Britt, Jørgensen, Claus B, Cirera, Susanna, Fredholm, Merete
Abstract Background Real-time quantitative PCR (qPCR) is a method for rapid and reliable quantification of mRNA transcription. Internal standards such as reference genes are used to normalise mRNA...
SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation (2007)
Panitz, Frank, Stengaard, Henrik, Hornshøj, Henrik, Gorodkin, Jan, Hedegaard, Jakob, Cirera, Susanna, ...
Motivation: Single nucleotide polymorphisms (SNPs) analysis is an important means to study genetic variation. A fast and cost-efficient approach to identify large numbers of novel candidates is the...
Gorodkin, Jan, Cirera, Susanna, Hedegaard, Jakob, Gilchrist, Michael J, Panitz, Frank, Jørgensen, Claus, ...
Background Knowledge of the structure of gene expression is essential for mammalian transcriptomics research. We analyzed a collection of more than one million porcine expressed sequence tags (ESTs),...
2007 Gorodkin et Volume al. 8, Issue 4, Article R45 Open Access (2007)
Jan Gorodkin, Susanna Cirera, Jakob Hedegaard, Michael J Gilchrist, Frank Panitz, Claus Jørgensen, ...
Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
BMC Molecular Biology BioMed Central Methodology article (2007)
Ann-britt Nygard, Claus B Jørgensen, Susanna Cirera, Merete Fredholm
Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR
The GENETPIG database: a tool for comparative mapping in pig (Sus scrofa) (2003)
Karsenty, Emmanuelle, Barillot, Emmanuel, Tosser-Klopp, Gwenola, Lahbib-Mansais, Yvette, Milan, Denis, Hatey, François, ...
The GENETPIG database has been established for storing and disseminating the results of the European project: ‘GENETPIG: identification of genes controlling economic traits in pig’. The partners...
mapping in pig (Sus scrofa) (2002)
Emmanuelle Karsenty, Emmanuel Barillot, Yvette Lahbib-mansais, Denis Milan, François Hatey, Susanna Cirera, ...
The GENETPIG database has been established for storing and disseminating the results of the European project: ‘GENETPIG: identification of genes controlling economic traits in pig’. The partners...
The GENETPIG database: a tool for comparative mapping in pig (Sus scrofa)
Karsenty, Emmanuelle, Barillot, Emmanuel, Tosser-Klopp, Gwenola, Lahbib-Mansais, Yvette, Milan, Denis, Hatey, François, ...
The GENETPIG database has been established for storing and disseminating the results of the European project: ‘GENETPIG: identification of genes controlling economic traits in pig’. The partners...
The GENETPIG database: a tool for comparative mapping in pig (Sus scrofa)
Karsenty, Emmanuelle, Barillot, Emmanuel, Tosser-Klopp, Gwenola, Lahbib-Mansais, Yvette, Milan, Denis, Hatey, François, ...
The GENETPIG database has been established for storing and disseminating the results of the European project: ‘GENETPIG: identification of genes controlling economic traits in pig’. The partners...
Gorodkin, Jan, Cirera, Susanna, Hedegaard, Jakob, Gilchrist, Michael J, Panitz, Frank, Jørgensen, Claus, ...
A resource consisting of one million porcine ESTs is described, providing an essential resource for annotation, comparative genomics, assembly of the pig genome sequence, and further porcine...
Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR
Nygard, Ann-Britt, Jørgensen, Claus B, Cirera, Susanna, Fredholm, Merete