Binkowski, T Andrew, Joachimiak, Andrzej
Abstract Background Protein surfaces comprise only a fraction of the total residues but are the most conserved functional features of proteins. Surfaces performing identical functions are found in...
Identifying Surfaces of Proteins (2008)
T. Andrew Binkowski, Andrzej Joachimiak
Proteins function by interacting with other molecules, but their functional surfaces often involve only a small number of key residues. As structural genomics efforts continue to populate the protein...
Liang J: Order independent structural alignment of circularly permuted proteins (2008)
T. Andrew Binkowski, Bhaskar Dasgupta, Jie Liang
Abstract–Circular permutation connects the N and C termini of a protein and concurrently cleaves elsewhere in the chain, providing an important mechanism for generating novel protein fold and...
Liang J: Order independent structural alignment of circularly permuted proteins (2007)
T. Andrew Binkowski, Bhaskar Dasgupta
Abstract–Circular permutation connects the N and C termini of a protein and concurrently cleaves elsewhere in the chain, providing an important mechanism for generating novel protein fold and...
T. Andrew Binkowski, Patrick Freeman, Jie Liang
Detecting similar protein surfaces provides an important route for discovering unrecognized or novel functional relationship between proteins. The webserver pvSOAR (pocket and void Surfaces Of Amino...
T. Andrew Binkowski, Andrzej Joachimiak, Jie Liang
surface analysis for function annotation
Order independent structural alignment of circularly permuted proteins (2004)
Binkowski, T. Andrew, DasGupta, Bhaskar, Liang, Jie
Circular permutation connects the N and C termini of a protein and concurrently cleaves elsewhere in the chain, providing an important mechanism for generating novel protein fold and functions....
Nathan O. Stitziel, T. Andrew Binkowski, Yan Yuan Tseng, Jie Liang, Simon Kasif
The database of topographic mapping of Single Nucleotide Polymorphism (topoSNP) provides an online resource for analyzing non-synonymous SNPs (nsSNPs) that can be mapped onto known 3D structures of...
T. Andrew Binkowski, Patrick Freeman, Jie Liang
Detecting similar protein surfaces provides an important route for discovering unrecognized or novel functional relationship between proteins. The web server pvSOAR (pocket and void Surfaces Of Amino...
Binkowski, T. Andrew, Freeman, Patrick, Liang, Jie
Detecting similar protein surfaces provides an important route for discovering unrecognized or novel functional relationship between proteins. The web server pvSOAR (pocket and void Surfaces Of Amino...
Stitziel, Nathan O., Binkowski, T. Andrew, Tseng, Yan Yuan, Kasif, Simon, Liang, Jie
The database of topographic mapping of Single Nucleotide Polymorphism (topoSNP) provides an online resource for analyzing non‐synonymous SNPs (nsSNPs) that can be mapped onto known 3D structures...
CASTp: Computed atlas of surface topography of proteins (2003)
T. Andrew Binkowski, Shapor Naghibzadeh, Jie Liang
Computed atlas of surface topography of proteins (CASTp) provides an online resource for locating, delineating, and measuring concave surface regions on three-dimensional structures of proteins....
Higher-order interhelical spatial interactions in membrane proteins (2003)
Larisa Adamian, Ronald Jackups, T. Andrew Binkowski, Jie Liang
Membrane proteins play essential cellular roles, including signal transduction, proton pumping, ion transport, and light harvesting. Although transmembrane (TM) helices can be predicted
T. Andrew Binkowski, Larisa Adamian, Jie Liang
es, and for further inquiries on evolutionary origins of structural elements important for protein function. q 2003 Elsevier Ltd. All rights reserved. Keywords: protein surface; surface pattern;...
CASTp: Computed Atlas of Surface Topography of proteins (2003)
Binkowski, T. Andrew, Naghibzadeh, Shapor, Liang, Jie
Computed Atlas of Surface Topography of proteins (CASTp) provides an online resource for locating, delineating and measuring concave surface regions on three-dimensional structures of proteins. These...
CASTp: Computed Atlas of Surface Topography of proteins
Binkowski, T. Andrew, Naghibzadeh, Shapor, Liang, Jie
Computed Atlas of Surface Topography of proteins (CASTp) provides an online resource for locating, delineating and measuring concave surface regions on three-dimensional structures of proteins. These...
Stitziel, Nathan O., Binkowski, T. Andrew, Tseng, Yan Yuan, Kasif, Simon, Liang, Jie
The database of topographic mapping of Single Nucleotide Polymorphism (topoSNP) provides an online resource for analyzing non-synonymous SNPs (nsSNPs) that can be mapped onto known 3D structures of...
Binkowski, T. Andrew, Freeman, Patrick, Liang, Jie
Detecting similar protein surfaces provides an important route for discovering unrecognized or novel functional relationship between proteins. The web server pvSOAR (pocket and void Surfaces Of Amino...
CASTp: Computed Atlas of Surface Topography of proteins
Binkowski, T. Andrew, Naghibzadeh, Shapor, Liang, Jie
Computed Atlas of Surface Topography of proteins (CASTp) provides an online resource for locating, delineating and measuring concave surface regions on three-dimensional structures of proteins. These...
Stitziel, Nathan O., Binkowski, T. Andrew, Tseng, Yan Yuan, Kasif, Simon, Liang, Jie
The database of topographic mapping of Single Nucleotide Polymorphism (topoSNP) provides an online resource for analyzing non-synonymous SNPs (nsSNPs) that can be mapped onto known 3D structures of...
Binkowski, T. Andrew, Freeman, Patrick, Liang, Jie
Detecting similar protein surfaces provides an important route for discovering unrecognized or novel functional relationship between proteins. The web server pvSOAR (pocket and void Surfaces Of Amino...
Protein surface analysis for function annotation in high-throughput structural genomics pipeline
Binkowski, T. Andrew, Joachimiak, Andrzej, Liang, Jie
Structural genomics (SG) initiatives are expanding the universe of protein fold space by rapidly determining structures of proteins that were intentionally selected on the basis of low sequence...