InterPro, progress and status in 2005 (2005)
Mulder, N. J., Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Binns, D., ...
InterPro, an integrated documentation resource of protein families, domains and functional sites, was created to integrate the major protein signature databases. Currently, it includes PROSITE, Pfam,...
UTOPIA—User-Friendly Tools for Operating Informatics Applications (2004)
S. R. Pettifer, J. R. Sinnott, T. K. Attwood
Bioinformaticians routinely analyse vast amounts of information held both in large remote databases and in flat data files hosted on local machines. The contemporary toolkit available for this...
The InterPro Database, 2003 brings increased coverage and new features (2003)
Mulder, N. J., Apweiler, R., Attwood, T. K., Bairoch, A., Barrell, D., Bateman, A., ...
InterPro, an integrated documentation resource of protein families, domains and functional sites, was created in 1999 as a means of amalgamating the major protein signature databases into one...
CINEMA-MX:- A modular multiple alignment editor (2002)
P. W. Lord, J. N. Selley, T. K. Attwood
Summary: Analysing and visualising multiple sequence alignments is a common task in many areas of molecular biology and bioinformatics. Many tools exist for this purpose, but are not easily...
Mulder, N. J., Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Binns, D., ...
The exponential increase in the submission of nucleotide sequences to the nucleotide sequence database by genome sequencing centres has resulted in a need for rapid, automatic methods for...
R. Apweiler, T. K. Attwood, A. Bateman, M. Biswas, P. Bucher, L. Cerutti, ...
Signature databases are vital tools for identifying distant relationships in novel sequences and hence for inferring protein function. InterPro is an integrated documentation resource for protein...
Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Birney, E., Biswas, M., ...
Signature databases are vital tools for identifying distant relationships in novel sequences and hence for inferring protein function. InterPro is an integrated documentation resource for protein...
Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Birney, E., Biswas, M., ...
MOTIVATION: InterPro is a new integrated documentation resource for protein families, domains and functional sites, developed initially as a means of rationalising the complementary efforts of the...
The PRINTS protein fingerprint database in its fifth year (1997)
PRINTS is a database of protein family `fingerprints' offering a diagnostic resource for newly-determined sequences. By contrast with PROSITE, which uses single consensus expressions to characterise...
Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Birney, E., Biswas, M., ...
Signature databases are vital tools for identifying distant relationships in novel sequences and hence for inferring protein function. InterPro is an integrated documentation resource for protein...
PRINTS and PRINTS-S shed light on protein ancestry
Attwood, T. K., Blythe, M. J., Flower, D. R., Gaulton, A., Mabey, J. E., Maudling, N., ...
The PRINTS database houses a collection of protein fingerprints. These may be used to make family and tentative functional assignments for uncharacterised sequences. The September 2001 release...
PRINTS-S: the database formerly known as PRINTS
Attwood, T. K., Croning, M. D. R., Flower, D. R., Lewis, A. P., Mabey, J. E., Scordis, P., ...
The PRINTS database houses a collection of protein family fingerprints. These are groups of motifs that together are diagnostically more potent than single motifs by virtue of the biological context...
Progress with the PRINTS protein fingerprint database.
Attwood, T K, Beck, M E, Bleasby, A J, Degtyarenko, K, Parry Smith, D J
PRINTS is a compendium of protein motif 'fingerprints' derived from the OWL composite sequence database. Fingerprints are groups of motifs within sequence alignments whose conserved nature allows...
Novel developments with the PRINTS protein fingerprint database.
Attwood, T K, Beck, M E, Bleasby, A J, Degtyarenko, K, Michie, A D, Parry-Smith, D J
The PRINTS database of protein family 'fingerprints' is a diagnostic resource that complements the PROSITE dictionary of sites and patterns. Unlike regular expressions, fingerprints exploit groups of...
The PRINTS protein fingerprint database in its fifth year.
Attwood, T K, Beck, M E, Flower, D R, Scordis, P, Selley, J N
PRINTS is a database of protein family 'fingerprints' offering a diagnostic resource for newly-determined sequences. By contrast with PROSITE, which uses single consensus expressions to characterise...
PRINTS prepares for the new millennium.
Attwood, T K, Flower, D R, Lewis, A P, Mabey, J E, Morgan, S R, Scordis, P, ...
PRINTS is a diagnostic collection of protein fingerprints. Fingerprints exploit groups of motifs to build characteristic family signatures, offering improved diagnostic reliability over single-motif...
PRINTS and its automatic supplement, prePRINTS
Attwood, T. K., Bradley, P., Flower, D. R., Gaulton, A., Maudling, N., Mitchell, A. L., ...
The PRINTS database houses a collection of protein fingerprints. These may be used to assign uncharacterised sequences to known families and hence to infer tentative functions. The September 2002...
OWL--a non-redundant composite protein sequence database.
Bleasby, A J, Akrigg, D, Attwood, T K
A comprehensive, non-redundant composite protein sequence database is described. The database, OWL, is an amalgam of data from six publicly-available primary sources, and is generated using strict...
PRINTS--a database of protein motif fingerprints.
Attwood, T K, Beck, M E, Bleasby, A J, Parry-Smith, D J
PRINTS is a compendium of protein motif 'fingerprints'. A fingerprint is defined as a group of motifs excised from conserved regions of a sequence alignment, whose diagnostic power or potency is...
CADRE: the Central Aspergillus Data REpository
Mabey, J. E., Anderson, M. J., Giles, P. F., Miller, C. J., Attwood, T. K., Paton, N. W., ...
CADRE is a public resource for housing and analysing genomic data extracted from species of Aspergillus. It arose to enable maintenance of the complete annotated genomic sequence of Aspergillus...
Apweiler, R., Attwood, T. K., Bairoch, A., Bateman, A., Birney, E., Biswas, M., ...
Signature databases are vital tools for identifying distant relationships in novel sequences and hence for inferring protein function. InterPro is an integrated documentation resource for protein...
PRINTS and PRINTS-S shed light on protein ancestry
Attwood, T. K., Blythe, M. J., Flower, D. R., Gaulton, A., Mabey, J. E., Maudling, N., ...
The PRINTS database houses a collection of protein fingerprints. These may be used to make family and tentative functional assignments for uncharacterised sequences. The September 2001 release...
PRINTS-S: the database formerly known as PRINTS
Attwood, T. K., Croning, M. D. R., Flower, D. R., Lewis, A. P., Mabey, J. E., Scordis, P., ...
The PRINTS database houses a collection of protein family fingerprints. These are groups of motifs that together are diagnostically more potent than single motifs by virtue of the biological context...
Progress with the PRINTS protein fingerprint database.
Attwood, T K, Beck, M E, Bleasby, A J, Degtyarenko, K, Parry Smith, D J
PRINTS is a compendium of protein motif 'fingerprints' derived from the OWL composite sequence database. Fingerprints are groups of motifs within sequence alignments whose conserved nature allows...
Novel developments with the PRINTS protein fingerprint database.
Attwood, T K, Beck, M E, Bleasby, A J, Degtyarenko, K, Michie, A D, Parry-Smith, D J
The PRINTS database of protein family 'fingerprints' is a diagnostic resource that complements the PROSITE dictionary of sites and patterns. Unlike regular expressions, fingerprints exploit groups of...
The PRINTS protein fingerprint database in its fifth year.
Attwood, T K, Beck, M E, Flower, D R, Scordis, P, Selley, J N
PRINTS is a database of protein family 'fingerprints' offering a diagnostic resource for newly-determined sequences. By contrast with PROSITE, which uses single consensus expressions to characterise...
PRINTS prepares for the new millennium.
Attwood, T K, Flower, D R, Lewis, A P, Mabey, J E, Morgan, S R, Scordis, P, ...
PRINTS is a diagnostic collection of protein fingerprints. Fingerprints exploit groups of motifs to build characteristic family signatures, offering improved diagnostic reliability over single-motif...
PRINTS and its automatic supplement, prePRINTS
Attwood, T. K., Bradley, P., Flower, D. R., Gaulton, A., Maudling, N., Mitchell, A. L., ...
The PRINTS database houses a collection of protein fingerprints. These may be used to assign uncharacterised sequences to known families and hence to infer tentative functions. The September 2002...
OWL--a non-redundant composite protein sequence database.
Bleasby, A J, Akrigg, D, Attwood, T K
A comprehensive, non-redundant composite protein sequence database is described. The database, OWL, is an amalgam of data from six publicly-available primary sources, and is generated using strict...
PRINTS--a database of protein motif fingerprints.
Attwood, T K, Beck, M E, Bleasby, A J, Parry-Smith, D J
PRINTS is a compendium of protein motif 'fingerprints'. A fingerprint is defined as a group of motifs excised from conserved regions of a sequence alignment, whose diagnostic power or potency is...
CADRE: the Central Aspergillus Data REpository
Mabey, J. E., Anderson, M. J., Giles, P. F., Miller, C. J., Attwood, T. K., Paton, N. W., ...
CADRE is a public resource for housing and analysing genomic data extracted from species of Aspergillus. It arose to enable maintenance of the complete annotated genomic sequence of Aspergillus...
Structure and sequence relationships in the lipocalins and related proteins.
Flower, D. R., North, A. C., Attwood, T. K.
The lipocalins and fatty acid-binding proteins (FABPs) are two recently identified protein families that both function by binding small hydrophobic molecules. We have sought to clarify relationships...
UTOPIA—User-Friendly Tools for Operating Informatics Applications
Pettifer, S. R., Sinnott, J. R., Attwood, T. K.
Bioinformaticians routinely analyse vast amounts of information held both in large remote databases and in flat data files hosted on local machines. The contemporary toolkit available for this...