Project Execution Plan for the Installation of the SOCAL Acoustic Range (SOAR), (2002)
The Southern California Acoustic Range (SOAR) is designed to provide a 100 square mile Anti Submarine Warfare training range in 4000 feet of sea water west of San Clemente Island, California. SAR...
The chemistry of 2-pyrone tricarbonyliron complexes /--by Ted Jones. (1980)
Thesis (Ph. D.)--University of Colorado at Boulder, 1980.
Prevalence of small inversions in yeast gene order evolution
Seoighe, Cathal, Federspiel, Nancy, Jones, Ted, Hansen, Nancy, Bivolarovic, Vesna, Surzycki, Ray, ...
Gene order evolution in two eukaryotes was studied by comparing the Saccharomyces cerevisiae genome sequence to extensive new data from whole-genome shotgun and cosmid sequencing of Candida albicans....
Genomic evidence for a complete sexual cycle in Candida albicans
Tzung, Keh-Weei, Williams, Roy M., Scherer, Stewart, Federspiel, Nancy, Jones, Ted, Hansen, Nancy, ...
Candida albicans is a diploid fungus that has become a medically important opportunistic pathogen in immunocompromised individuals. We have sequenced the C. albicans genome to 10.4-fold coverage and...
Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid
Barnett, Melanie J., Fisher, Robert F., Jones, Ted, Komp, Caridad, Abola, A. Pia, Barloy-Hubler, Frédérique, ...
The symbiotic nitrogen-fixing soil bacterium Sinorhizobium meliloti contains three replicons: pSymA, pSymB, and the chromosome. We report here the complete 1,354,226-nt sequence of pSymA. In addition...
Pereira, Maria Das Graças C., Atwill, Edward R., Jones, Ted
A direct immunofluorescence assay (DFA) (Merifluor; Meridian Diagnostics, Inc., Cincinnati, Ohio) was compared to an immunomagnetic separation (IMS) assay (Dynabeads; Dynal, Inc., Lake Success, N.Y.)...
Infrequent Genetic Exchange and Recombination in the Mitochondrial Genome of Candida albicans
Anderson, James B., Wickens, Claire, Khan, Mustafa, Cowen, Leah E., Federspiel, Nancy, Jones, Ted, ...
Previous analyses of diploid nuclear genotypes have concluded that recombination has occurred in populations of the yeast Candida albicans. To address the possibilities of clonality and recombination...
Metabolic specialization associated with phenotypic switching in Candida albicans
Lan, Chung-Yu, Newport, George, Murillo, Luis A., Jones, Ted, Scherer, Stewart, Davis, Ronald W., ...
Phase and antigenic variation are mechanisms used by microbial pathogens to stochastically change their cell surface composition. A related property, referred to as phenotypic switching, has been...
The diploid genome sequence of Candida albicans
Jones, Ted, Federspiel, Nancy A., Chibana, Hiroji, Dungan, Jan, Kalman, Sue, Magee, B. B., ...
We present the diploid genome sequence of the fungal pathogen Candida albicans. Because C. albicans has no known haploid or homozygous form, sequencing was performed as a whole-genome shotgun of the...
SNP Discovery in Pooled Samples With Mismatch Repair Detection
Fakhrai-Rad, Hossein, Zheng, Jianbiao, Willis, Thomas D., Wong, Kee, Suyenaga, Kent, Moorhead, Martin, ...
A targeted discovery effort is required to identify low frequency single nucleotide polymorphisms (SNPs) in human coding and regulatory regions. We here describe combining mismatch repair detection...
Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae
Gu, Zhenglong, David, Lior, Petrov, Dmitri, Jones, Ted, Davis, Ronald W., Steinmetz, Lars M.
By using the maximum likelihood method, we made a genome-wide comparison of the evolutionary rates in the lineages leading to the laboratory strain (S288c) and a wild strain (YJM789) of Saccharomyces...
A high-resolution map of transcription in the yeast genome
David, Lior, Huber, Wolfgang, Granovskaia, Marina, Toedling, Joern, Palm, Curtis J., Bofkin, Lee, ...
There is abundant transcription from eukaryotic genomes unaccounted for by protein coding genes. A high-resolution genome-wide survey of transcription in a well annotated genome will help relate...
Prevalence of small inversions in yeast gene order evolution
Seoighe, Cathal, Federspiel, Nancy, Jones, Ted, Hansen, Nancy, Bivolarovic, Vesna, Surzycki, Ray, ...
Gene order evolution in two eukaryotes was studied by comparing the Saccharomyces cerevisiae genome sequence to extensive new data from whole-genome shotgun and cosmid sequencing of Candida albicans....
Genomic evidence for a complete sexual cycle in Candida albicans
Tzung, Keh-Weei, Williams, Roy M., Scherer, Stewart, Federspiel, Nancy, Jones, Ted, Hansen, Nancy, ...
Candida albicans is a diploid fungus that has become a medically important opportunistic pathogen in immunocompromised individuals. We have sequenced the C. albicans genome to 10.4-fold coverage and...
Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid
Barnett, Melanie J., Fisher, Robert F., Jones, Ted, Komp, Caridad, Abola, A. Pia, Barloy-Hubler, Frédérique, ...
The symbiotic nitrogen-fixing soil bacterium Sinorhizobium meliloti contains three replicons: pSymA, pSymB, and the chromosome. We report here the complete 1,354,226-nt sequence of pSymA. In addition...
Pereira, Maria Das Graças C., Atwill, Edward R., Jones, Ted
A direct immunofluorescence assay (DFA) (Merifluor; Meridian Diagnostics, Inc., Cincinnati, Ohio) was compared to an immunomagnetic separation (IMS) assay (Dynabeads; Dynal, Inc., Lake Success, N.Y.)...
Infrequent Genetic Exchange and Recombination in the Mitochondrial Genome of Candida albicans
Anderson, James B., Wickens, Claire, Khan, Mustafa, Cowen, Leah E., Federspiel, Nancy, Jones, Ted, ...
Previous analyses of diploid nuclear genotypes have concluded that recombination has occurred in populations of the yeast Candida albicans. To address the possibilities of clonality and recombination...
Metabolic specialization associated with phenotypic switching in Candida albicans
Lan, Chung-Yu, Newport, George, Murillo, Luis A., Jones, Ted, Scherer, Stewart, Davis, Ronald W., ...
Phase and antigenic variation are mechanisms used by microbial pathogens to stochastically change their cell surface composition. A related property, referred to as phenotypic switching, has been...
The diploid genome sequence of Candida albicans
Jones, Ted, Federspiel, Nancy A., Chibana, Hiroji, Dungan, Jan, Kalman, Sue, Magee, B. B., ...
We present the diploid genome sequence of the fungal pathogen Candida albicans. Because C. albicans has no known haploid or homozygous form, sequencing was performed as a whole-genome shotgun of the...
SNP Discovery in Pooled Samples With Mismatch Repair Detection
Fakhrai-Rad, Hossein, Zheng, Jianbiao, Willis, Thomas D., Wong, Kee, Suyenaga, Kent, Moorhead, Martin, ...
A targeted discovery effort is required to identify low frequency single nucleotide polymorphisms (SNPs) in human coding and regulatory regions. We here describe combining mismatch repair detection...
Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae
Gu, Zhenglong, David, Lior, Petrov, Dmitri, Jones, Ted, Davis, Ronald W., Steinmetz, Lars M.
By using the maximum likelihood method, we made a genome-wide comparison of the evolutionary rates in the lineages leading to the laboratory strain (S288c) and a wild strain (YJM789) of Saccharomyces...
A high-resolution map of transcription in the yeast genome
David, Lior, Huber, Wolfgang, Granovskaia, Marina, Toedling, Joern, Palm, Curtis J., Bofkin, Lee, ...
There is abundant transcription from eukaryotic genomes unaccounted for by protein coding genes. A high-resolution genome-wide survey of transcription in a well annotated genome will help relate...
Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
Wei, Wu, McCusker, John H., Hyman, Richard W., Jones, Ted, Ning, Ye, Cao, Zhiwei, ...
We sequenced the genome of Saccharomyces cerevisiae strain YJM789, which was derived from a yeast isolated from the lung of an AIDS patient with pneumonia. The strain is used for studies of fungal...