Probability and Statistics: Essays in Honor of David A. Freedman (2008)
This volume is our tribute to David A. Freedman, whom we regard as one of the great statisticians of our time. He received his B.Sc. degree from McGill University and his Ph.D. from Princeton, and...
Comparison of discrimination methods for the classi of tumors using gene expression data (2008)
Terry Speed, J. Fridly, M. J. Callow, Y. H. Yang, Y. H. Yang, S. Dudoit, ...
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. August 2000. Y.H. Yang, M. J. Buckley, S. Dudoit and T.P.Speed. Comparison of methods for...
Richard M. Neve, Koei Chin, Jane Fridly, Jennifer Yeh, Frederick L. Baehner, Tea Fevr, ...
collection of breast cancer cell lines for the study of functionally
Georlette, Daphne, Ahn, Soyeon, MacAlpine, David M., Cheung, Evelyn, Lewis, Peter W., Beall, Eileen L., ...
Myb–MuvB (MMB)/dREAM is a nine-subunit complex first described in Drosophila as a repressor of transcription, dependent on E2F2 and the RBFs. Myb, an integral member of MMB, curiously plays no role...
Rooting a phylogenetic tree with nonreversible substitution models (2005)
Abstract Background We compared two methods of rooting a phylogenetic tree: the stationary and the nonstationary substitution processes. These methods do not require an outgroup. Methods Given a...
Jindan Yu, Including Drs An, Alan J. Hunt, Tom M. Glaser, Alfred O. Hero, J. Akerley, ...
Transcript profiling of the cone-only Nrl-knockout retina using custom cDNAmicroarrays: identification of novel targets of Nrl and of signaling pathways involved in photoreceptor function
GOstat: Find statistically overrepresented Gene Ontologies within a group of genes (2004)
Modern experimental techniques, as for example DNA microarrays, as a result produce usually a long list of genes, which are potentially interesting in the analyzed process. In order to gain...
GOstat: Find statistically overrepresented Gene Ontologies within a group of genes (2004)
Modern experimental techniques, as for example DNA microarrays, as a result produce usually a long list of genes, which are potentially interesting in the analyzed process. In order to gain...
Statistical issues in cDNA microarray data analysis (2003)
Gordon K. Smyth, Yee Hwa Yang, Terry Speed
Statistical considerations are frequently to the fore in the analysis of microarray data, as researchers sift through massive amounts of data and adjust for various sources of variability in order to...
Statistical issues in cDNA microarray data analysis (2003)
Gordon K. Smyth, Yee Hwa Yang, Terry Speed
Statistical considerations are frequently to the fore in the analysis of microarray data, as researchers sift through massive amounts of data and adjust for various sources of variability in order to...
An HMM model for coiled-coil domains and a comparison with PSSM-based predictions (2002)
Delorenzi, Mauro, Speed, Terry
Motivation: Large-scale sequence data require methods for the automated annotation of protein domains. Many of the predictive methods are based either on a Position Specific Scoring Matrix (PSSM) of...
Estimation of antigen-responsive T-cell frequencies in PBMC from human subjects (1996)
Karl Broman, Terry Speed, Michael Tigges
A new method for estimating the frequency of antigen-responsive Tcells, using a cell proliferation assay, is described. In this assay, the uptake of tritiated thymidine by peripheral blood...
Estimation of antigen-responsive T-cell frequencies in PBMC from human subjects (1996)
Karl Broman, Terry Speed, Michael Tigges
A new method for estimating the frequency of antigen-responsive T-cells, using a cell proliferation assay, is described. In this assay, the uptake of tritiated thymidine, by peripheral blood...
Estimation of antigen-responsive T-cell frequencies in PBMC from human subjects (1996)
Karl Broman, Terry Speed, Michael Tigges Y
A new method for estimating the frequency of antigen-responsive T-cells, using a cell proliferation assay, is described. In this assay, the uptake of tritiated thymidine, by peripheral blood...
Triglia, Tony, Thompson, Jenny, Caruana, Sonia R., Delorenzi, Mauro, Speed, Terry, Cowman, Alan F.
Plasmodium falciparum infections can be fatal, while P. vivax infections usually are not. A possible factor involved in the greater virulence of P. falciparum is that this parasite grows in red blood...
Genes for Glycosylphosphatidylinositol Toxin Biosynthesis in Plasmodium falciparum
Delorenzi, Mauro, Sexton, Adrienne, Shams-Eldin, Hosam, Schwarz, Ralph T., Speed, Terry, Schofield, Louis
About 2.5 million people die of Plasmodium falciparum malaria every year. Fatalities are associated with systemic and organ-specific inflammation initiated by a parasite toxin. Recent studies show...
Triglia, Tony, Thompson, Jenny, Caruana, Sonia R., Delorenzi, Mauro, Speed, Terry, Cowman, Alan F.
Plasmodium falciparum infections can be fatal, while P. vivax infections usually are not. A possible factor involved in the greater virulence of P. falciparum is that this parasite grows in red blood...
Genes for Glycosylphosphatidylinositol Toxin Biosynthesis in Plasmodium falciparum
Delorenzi, Mauro, Sexton, Adrienne, Shams-Eldin, Hosam, Schwarz, Ralph T., Speed, Terry, Schofield, Louis
About 2.5 million people die of Plasmodium falciparum malaria every year. Fatalities are associated with systemic and organ-specific inflammation initiated by a parasite toxin. Recent studies show...
Georlette, Daphne, Ahn, Soyeon, MacAlpine, David M., Cheung, Evelyn, Lewis, Peter W., Beall, Eileen L., ...
Myb–MuvB (MMB)/dREAM is a nine-subunit complex first described in Drosophila as a repressor of transcription, dependent on E2F2 and the RBFs. Myb, an integral member of MMB, curiously plays no role...