From Constrained to Unconstrained Maximum Agreement Subtree in Linear Time ∗ (2008)
V. Berry, Z. S. Peng, H. F. Ting
We propose and study the Maximum Constrained Agreement Sub-tree (MCAST) problem, which is a variant of the classical Maximum Agreement Subtree (MAST) problem. Our problem allows users to ap-ply their...
Computational Statistics Data Analysis 38 (2000) 273--283 (2008)
Www Elsevier Com, V. Berry, O. Gascuel, G. Caraux
We consider the problem of phylogenetic reconstruction, which consists in estimating the evolutionary history of a set of species. This unknown history is modelled as a tree and estimated from...
Fast Computation of Supertrees for Compatible Phylogenies with Nested Taxa (2006)
Typically, supertree methods combine a collection of source trees in which just the leaves are labeled by taxa. In such methods the resulting supertree is also leaf labeled. An underlying assumption...
SDM: Une Méthode de Distance Rapide pour les Etudes de Phylogénomique (2005)
Criscuolo, A., Berry, V., Douzery, V., Gascuel, O.
SDM: Une Méthode de Distance Rapide pour les Etudes de Phylogénomique
On the Approximation of Computing Evolutionary Trees (2005)
Berry, V., Francois, N., Guillemot, S., Paul, C.
On the Approximation of Computing Evolutionary Trees
Improved Parametrized Complexity of the Maximum Agreement Subtree and Maximum Compatible Tree problems
On the Approximation of Computing Evolutionary Trees (2005)
Berry, V., Francois, N., Guillemot, S., Paul, C.
On the Approximation of Computing Evolutionary Trees
SDM: Une Méthode de Distance Rapide pour les Etudes de Phylogénomique (2005)
Criscuolo, A., Berry, V., Douzery, V., Gascuel, O.
SDM: Une Méthode de Distance Rapide pour les Etudes de Phylogénomique
Highly Selective, Electrically Conductive Monolayer of Nanoparticles on Live Bacteria (2004)
Berry, V, S, RangaSwamy, Saraf, Ravi
Using specific peptide−bacteria affinity, a monolayer of 30 nm Au particle is selectively deposited on live bacteria surface to produce electrically conducting bridges spanning over 12 μm. The...
Maximum Agreement and Compatible Supertrees (2004)
Maximum Agreement and Compatible Supertrees
Maximum Agreement and Compatible Supertrees (2004)
Maximum Agreement and Compatible Supertrees
Reddy, M. Ashwin, Bateman, O. A., Chakarova, C., Ferris, J., Berry, V., Lomas, E., ...
Congenital cataract is a leading cause of visual disability in children. Inherited isolated (non-syndromic) cataract represents a significant proportion of cases and the identification of genes...
Reddy, M.A., Bateman, O.A., Chakarova, C., Ferris, J., Berry, V., Lomas, E., ...
Congenital cataract is a leading cause of visual disability in children. Inherited isolated (non-syndromic) cataract represents a significant proportion of cases and the identification of genes...
Reddy, M. Ashwin, Bateman, O. A., Chakarova, C., Ferris, J., Berry, V., Lomas, E., ...
Congenital cataract is a leading cause of visual disability in children. Inherited isolated (non-syndromic) cataract represents a significant proportion of cases and the identification of genes...
Berry, V., Francis, P., Reddy, M. A., Collyer, D., Vithana, E., MacKay, I, ...
Congenital cataracts are an important cause of bilateral visual impairment in infants. In a four-generation family of English descent, we mapped dominant congenital posterior polar cataract to...
Berry, V., Francis, P., Reddy, M.A., Collyer, D., Vithana, E., MacKay, I., ...
Congenital cataracts are an important cause of bilateral visual impairment in infants. In a four-generation family of English descent, we mapped dominant congenital posterior polar cataract to...
A locus for autosomal dominant posterior polar cataract on chromosome 1p (1997)
Ionides, AC, Berry, V, Mackay, DS, Moore, AT, Bhattacharya, SS, Shiels, A
A locus for autosomal dominant anterior polar cataract on chromosome 17p (1996)
Berry, V, Ionides, AC, Moore, AT, Plant, C, Bhattacharya, SS, Shiels, A
Woodnutt, G., Berry, V., Kernutt, I., Mizen, L.
The distribution of amoxycillin, ticarcillin and clavulanic acid into lymph collected from the right lymphatic duct of rabbits was examined after intravenous administration. The compounds were...
Bactericidal and morphological effects of amoxicillin on Helicobacter pylori.
Berry, V, Jennings, K, Woodnutt, G
The growth kinetics of Helicobacter pylori after it has been exposed to amoxicillin have been investigated in conjunction with studies of cell morphology. A potent bactericidal effect was observed at...
Effect of protein binding on penetration of beta-lactams into rabbit peripheral lymph.
Woodnutt, G, Berry, V, Mizen, L
The relevance of protein binding to penetration of beta-lactams into body fluids was investigated by examining the distribution of amoxicillin, ceftriaxone, clavulanic acid, temocillin, and...
Woodnutt, G, Berry, V, Mizen, L
Studies were performed to determine the effects of BRL 42715, a potent beta-lactamase inhibitor, on the activity of cefazolin and piperacillin against experimental intraperitoneal infections caused...
A new locus for dominant "zonular pulverulent" cataract, on chromosome 13.
Mackay, D, Ionides, A, Berry, V, Moore, A, Bhattacharya, S, Shiels, A
Inherited cataract is a clinically and genetically heterogeneous disease that most often presents as a congenital autosomal dominant trait. Here we report the linkage of a new locus for dominant...
Shiels, A, Mackay, D, Ionides, A, Berry, V, Moore, A, Bhattacharya, S
CZP1, a locus for autosomal dominant "zonular pulverulent" cataract, previously had been linked with the Duffy blood-group-antigen locus on chromosome 1q. Here we report genetic refinement of the...
Connexin46 mutations in autosomal dominant congenital cataract.
Mackay, D, Ionides, A, Kibar, Z, Rouleau, G, Berry, V, Moore, A, ...
Loci for autosomal dominant "zonular pulverulent" cataract have been mapped to chromosomes 1q (CZP1) and 13q (CZP3). Here we report genetic refinement of the CZP3 locus and identify underlying...
Bactericidal and morphological effects of amoxicillin on Helicobacter pylori.
Berry, V, Jennings, K, Woodnutt, G
The growth kinetics of Helicobacter pylori after it has been exposed to amoxicillin have been investigated in conjunction with studies of cell morphology. A potent bactericidal effect was observed at...
Effect of protein binding on penetration of beta-lactams into rabbit peripheral lymph.
Woodnutt, G, Berry, V, Mizen, L
The relevance of protein binding to penetration of beta-lactams into body fluids was investigated by examining the distribution of amoxicillin, ceftriaxone, clavulanic acid, temocillin, and...
Woodnutt, G, Berry, V, Mizen, L
Studies were performed to determine the effects of BRL 42715, a potent beta-lactamase inhibitor, on the activity of cefazolin and piperacillin against experimental intraperitoneal infections caused...
Shiels, A, Mackay, D, Ionides, A, Berry, V, Moore, A, Bhattacharya, S
CZP1, a locus for autosomal dominant "zonular pulverulent" cataract, previously had been linked with the Duffy blood-group-antigen locus on chromosome 1q. Here we report genetic refinement of the...
Connexin46 mutations in autosomal dominant congenital cataract.
Mackay, D, Ionides, A, Kibar, Z, Rouleau, G, Berry, V, Moore, A, ...
Loci for autosomal dominant "zonular pulverulent" cataract have been mapped to chromosomes 1q (CZP1) and 13q (CZP3). Here we report genetic refinement of the CZP3 locus and identify underlying...
A new locus for dominant "zonular pulverulent" cataract, on chromosome 13.
Mackay, D, Ionides, A, Berry, V, Moore, A, Bhattacharya, S, Shiels, A
Inherited cataract is a clinically and genetically heterogeneous disease that most often presents as a congenital autosomal dominant trait. Here we report the linkage of a new locus for dominant...
Clinical and genetic heterogeneity in autosomal dominant cataract
Ionides, A., Francis, P., Berry, V., Mackay, D., Bhattacharya, S., Shiels, A., ...
AIMS—To determine the different morphologies of autosomal dominant cataract (ADC), assess the intra- and interfamilial variation in cataract morphology, and undertake a genetic linkage study to...
Francis, P., Berry, V., Bhattacharya, S., Moore, A.
BACKGROUND—Congenital cataract, when inherited as an isolated abnormality, is phenotypically and genetically heterogeneous. Although there is no agreed nomenclature for the patterns of cataract...
Reddy, M A, Francis, P J, Berry, V, Bradshaw, K, Patel, R J, Maher, E R, ...
Aim: To phenotype and genetically map the disease locus in a family presenting with autosomal dominant microcornea, rod-cone dystrophy, cataract, and posterior staphyloma.
Posterior polar cataract is the predominant consequence of a recurrent mutation in the PITX3 gene
Addison, P K F, Berry, V, Ionides, A C W, Francis, P J, Bhattacharya, S S, Moore, A T
Background: The authors recently identified three large genetically unrelated families with an identical 17 base pair duplication mutation in exon 4 of the PITX3 gene. Here, they report the detailed...
The genetics of childhood cataract
Francis, P, Berry, V, Bhattacharya, S, Moore, A
Human congenital cataract has a diverse aetiology. In the proportion of cases where the cause is genetic, the disease shows wide phenotypic and genetic heterogeneity. Over the past few years, much...
A locus for isolated cataract on human Xp
Francis, P, Berry, V, Hardcastle, A, Maher, E, Moore, A, Bhattacharya, S
Purpose: To genetically map the gene causing isolated X linked cataract in a large European pedigree.
Recurrent 17 bp duplication in PITX3 is primarily associated with posterior polar cataract (CPP4)
Berry, V, Yang, Z, Addison, P, Francis, P, Ionides, A, Karan, G, ...
Posterior polar cataract is the predominant consequence of a recurrent mutation in the PITX3 gene
Addison, P, Berry, V, Ionides, A, Francis, P, Bhattacharya, S, Moore, A