Touchon, Marie, Hoede, Claire, Tenaillon, Olivier, Barbe, Valérie, Baeriswyl, Simon, Bidet, Philippe, ...
The Escherichia coli species represents one of the best-studied model organisms, but also encompasses a variety of commensal and pathogenic strains that diversify by high rates of genetic change. We...
Touchon, Marie, Hoede, Claire, Tenaillon, Olivier, Barbe, Valérie, Baeriswyl, Simon, Bidet, Philippe, ...
The Escherichia coli species represents one of the best-studied model organisms, but also encompasses a variety of commensal and pathogenic strains that diversify by high rates of genetic change. We...
Touchon, Marie, Hoede, Claire, Tenaillon, Olivier, Barbe, Valérie, Baeriswyl, Simon, Bidet, Philippe, ...
The Escherichia coli species represents one of the best-studied model organisms, but also encompasses a variety of commensal and pathogenic strains that diversify by high rates of genetic change. We...
Aury, Jean-Marc, Cruaud, Corinne, Barbe, Valérie, Rogier, Odile, Mangenot, Sophie, Samson, Gaelle, ...
Abstract Background Massively parallel DNA sequencing instruments are enabling the decoding of whole genomes at significantly lower cost and higher throughput than classical Sanger technology. Each...
Amadou, Claire, Pascal, Géraldine, Mangenot, Sophie, Glew, Michelle, Bontemps, Cyril, Capela, Delphine, ...
We report the first complete genome sequence of a β-proteobacterial nitrogen-fixing symbiont of legumes, Cupriavidus taiwanensis LMG19424. The genome consists of two chromosomes of size 3.42 Mb and...
Being Pathogenic, Plastic, and Sexual while Living with a Nearly Minimal Bacterial Genome (2007)
Pascal Sirand-Pugnet, Carole Lartigue, Marc Marenda, Daniel Jacob, Aurélien Barré, Valérie Barbe, ...
Mycoplasmas are commonly described as the simplest self-replicating organisms, whose evolution was mainly characterized by genome downsizing with a proposed evolutionary scenario similar to that of...
A Tale of Two Oxidation States: Bacterial Colonization of Arsenic-Rich Environments (2007)
Daniel Muller, Claudine Médigue, Sandrine Koechler, Valérie Barbe, Mohamed Barakat, Emmanuel Talla, ...
Microbial biotransformations have a major impact on contamination by toxic elements, which threatens public health in developing and industrial countries. Finding a means of preserving natural...
A Tale of Two Oxidation States: Bacterial Colonization of Arsenic-Rich Environments (2007)
Daniel Muller, Claudine Médigue, Sandrine Koechler, Valérie Barbe, Mohamed Barakat, Emmanuel Talla, ...
Microbial biotransformations have a major impact on the contamination by toxic elements, threatening public health in developing and industrial countries. Finding means of preserving natural...
A tale of two oxidation states: bacterial colonization of arsenic-rich environments. (2007)
Muller, Daniel, Médigue, Claudine, Koechler, Sandrine, Barbe, Valérie, Barakat, Mohamed, Talla, Emmanuel, ...
Microbial biotransformations have a major impact on contamination by toxic elements, which threatens public health in developing and industrial countries. Finding a means of preserving natural...
A tale of two oxidation states: bacterial colonization of arsenic-rich environments. (2007)
Muller, Daniel, Médigue, Claudine, Koechler, Sandrine, Barbe, Valérie, Barakat, Mohamed, Talla, Emmanuel, ...
Microbial biotransformations have a major impact on contamination by toxic elements, which threatens public health in developing and industrial countries. Finding a means of preserving natural...
Céline Plainvert, Chantal Peigne, Valérie Barbe, Claudine Médigue, Erick Denamur, Edouard Bingen, ...
A new highly pathogenic clone of Escherichia coli meningitis strains harboring the unusual serogroup O45 has recently emerged in France. To gain insight into the pathogenicity of this new clone, we...
Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii (2006)
Pierre-Edouard Fournier, David Vallenet, Valérie Barbe, Stéphane Audic, Hiroyuki Ogata, Laurent Poirel, ...
Acinetobacter baumannii is a species of nonfermentative gram-negative bacteria commonly found in water and soil. This organism was susceptible to most antibiotics in the 1970s. It has now become a...
a microbial genome annotation system supported by synteny results (2006)
David Vallenet, Laurent Labarre, Zoé Rouy, Valérie Barbe, Stéphanie Bocs, Stéphane Cruveiller, ...
Magnifying Genomes (MaGe) is a microbial genome annotation system based on a relational database containing information on bacterial genomes, as well as a web interface to achieve genome annotation...
MaGe: a microbial genome annotation system supported by synteny results (2006)
Vallenet, David, Labarre, Laurent, Rouy, Zoé, Barbe, Valérie, Bocs, Stéphanie, Cruveiller, Stéphane, ...
Magnifying Genomes (MaGe) is a microbial genome annotation system based on a relational database containing information on bacterial genomes, as well as a web interface to achieve genome annotation...
Evolution of the Terminal Regions of the Streptomyces Linear Chromosome (2006)
Choulet, Frédéric, Aigle, Bertrand, Gallois, Alexandre, Mangenot, Sophie, Gerbaud, Claude, Truong, Chantal, ...
Comparative analysis of the Streptomyces chromosome sequences, between Streptomyces coelicolor, Streptomyces avermitilis, and Streptomyces ambofaciens ATCC23877 (whose partial sequence is released in...
Evolution of the Terminal Regions of the Streptomyces Linear Chromosome (2006)
Choulet, Frédéric, Aigle, Bertrand, Gallois, Alexandre, Mangenot, Sophie, Gerbaud, Claude, Truong, Chantal, ...
Comparative analysis of the Streptomyces chromosome sequences, between S. coelicolor, S. avermitilis and S. ambofaciens ATCC23877 (whose partial sequence is released in this study), revealed a highly...
Médigue, Claudine, Krin, Evelyne, Pascal, Géraldine, Barbe, Valérie, Bernsel, Andreas, Bertin, Philippe N., ...
A considerable fraction of life develops in the sea at temperatures lower than 15°C. Little is known about the adaptive features selected under those conditions. We present the analysis of the...
Médigue, Claudine, Krin, Evelyne, Pascal, Géraldine, Barbe, Valérie, Bernsel, Andreas, Bertin, Philippe N., ...
A considerable fraction of life develops in the sea at temperatures lower than 15°C. Little is known about the adaptive features selected under those conditions. We present the analysis of the...
Barbe, Valérie, Vallenet, David, Fonknechten, Nuria, Kreimeyer, Annett, Oztas, Sophie, Labarre, Laurent, ...
Acinetobacter sp. strain ADP1 is a nutritionally versatile soil bacterium closely related to representatives of the well-characterized Pseudomonas aeruginosa and Pseudomonas putida. Unlike these...
Comparative Sequence Analysis of the X-Inactivation Center Region in Mouse, Human, and Bovine (2002)
Chureau, Corinne, Prissette, Marine, Bourdet, Agnès, Barbe, Valérie, Cattolico, Laurence, Jones, Louis, ...
Peyret, Pierre, Katinka, Michael D., Duprat, Simone, Duffieux, Francis, Barbe, Valérie, Barbazanges, Martin, ...
The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis (2001)
Chambaud, Isabelle, Heilig, Roland, Ferris, Stéphane, Barbe, Valérie, Samson, Delphine, Galisson, Frédérique, ...
Mycoplasma pulmonis is a wall-less eubacterium belonging to the Mollicutes (trivial name, mycoplasmas) and responsible for murine respiratory diseases. The genome of strain UAB CTIP is composed of a...
The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis
Chambaud, Isabelle, Heilig, Roland, Ferris, Stéphane, Barbe, Valérie, Samson, Delphine, Galisson, Frédérique, ...
Mycoplasma pulmonis is a wall-less eubacterium belonging to the Mollicutes (trivial name, mycoplasmas) and responsible for murine respiratory diseases. The genome of strain UAB CTIP is composed of a...
Dufresne, Alexis, Salanoubat, Marcel, Partensky, Frédéric, Artiguenave, François, Axmann, Ilka M., Barbe, Valérie, ...
Prochlorococcus marinus, the dominant photosynthetic organism in the ocean, is found in two main ecological forms: high-light-adapted genotypes in the upper part of the water column and...
Peyret, Pierre, Katinka, Michael D., Duprat, Simone, Duffieux, Francis, Barbe, Valérie, Barbazanges, Martin, ...
A DNA sequencing program was applied to the small (
Barbe, Valérie, Vallenet, David, Fonknechten, Nuria, Kreimeyer, Annett, Oztas, Sophie, Labarre, Laurent, ...
Acinetobacter sp. strain ADP1 is a nutritionally versatile soil bacterium closely related to representatives of the well-characterized Pseudomonas aeruginosa and Pseudomonas putida. Unlike these...
Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii
Fournier, Pierre-Edouard, Vallenet, David, Barbe, Valérie, Audic, Stéphane, Ogata, Hiroyuki, Poirel, Laurent, ...
Acinetobacter baumannii is a species of nonfermentative gram-negative bacteria commonly found in water and soil. This organism was susceptible to most antibiotics in the 1970s. It has now become a...
MaGe: a microbial genome annotation system supported by synteny results
Vallenet, David, Labarre, Laurent, Rouy, Zoé, Barbe, Valérie, Bocs, Stéphanie, Cruveiller, Stéphane, ...
Magnifying Genomes (MaGe) is a microbial genome annotation system based on a relational database containing information on bacterial genomes, as well as a web interface to achieve genome annotation...
Comparative Sequence Analysis of the X-Inactivation Center Region in Mouse, Human, and Bovine
Chureau, Corinne, Prissette, Marine, Bourdet, Agnès, Barbe, Valérie, Cattolico, Laurence, Jones, Louis, ...
We have sequenced to high levels of accuracy 714-kb and 233-kb regions of the mouse and bovine X-inactivation centers (Xic), respectively, centered on the Xist gene. This has provided the basis for a...
Médigue, Claudine, Krin, Evelyne, Pascal, Géraldine, Barbe, Valérie, Bernsel, Andreas, Bertin, Philippe N., ...
A considerable fraction of life develops in the sea at temperatures lower than 15°C. Little is known about the adaptive features selected under those conditions. We present the analysis of the...
Marenda, Marc, Barbe, Valérie, Gourgues, Géraldine, Mangenot, Sophie, Sagne, Evelyne, Citti, Christine
An integrative conjugative element, ICEA, was characterized in Mycoplasma agalactiae strain 5632, in which it occurs as multiple chromosomal copies and as a free circular form. The distribution of...
The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis
Chambaud, Isabelle, Heilig, Roland, Ferris, Stéphane, Barbe, Valérie, Samson, Delphine, Galisson, Frédérique, ...
Mycoplasma pulmonis is a wall-less eubacterium belonging to the Mollicutes (trivial name, mycoplasmas) and responsible for murine respiratory diseases. The genome of strain UAB CTIP is composed of a...
Dufresne, Alexis, Salanoubat, Marcel, Partensky, Frédéric, Artiguenave, François, Axmann, Ilka M., Barbe, Valérie, ...
Prochlorococcus marinus, the dominant photosynthetic organism in the ocean, is found in two main ecological forms: high-light-adapted genotypes in the upper part of the water column and...
Peyret, Pierre, Katinka, Michael D., Duprat, Simone, Duffieux, Francis, Barbe, Valérie, Barbazanges, Martin, ...
A DNA sequencing program was applied to the small (
Barbe, Valérie, Vallenet, David, Fonknechten, Nuria, Kreimeyer, Annett, Oztas, Sophie, Labarre, Laurent, ...
Acinetobacter sp. strain ADP1 is a nutritionally versatile soil bacterium closely related to representatives of the well-characterized Pseudomonas aeruginosa and Pseudomonas putida. Unlike these...
Médigue, Claudine, Krin, Evelyne, Pascal, Géraldine, Barbe, Valérie, Bernsel, Andreas, Bertin, Philippe N., ...
A considerable fraction of life develops in the sea at temperatures lower than 15°C. Little is known about the adaptive features selected under those conditions. We present the analysis of the...
Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii
Fournier, Pierre-Edouard, Vallenet, David, Barbe, Valérie, Audic, Stéphane, Ogata, Hiroyuki, Poirel, Laurent, ...
Acinetobacter baumannii is a species of nonfermentative gram-negative bacteria commonly found in water and soil. This organism was susceptible to most antibiotics in the 1970s. It has now become a...
MaGe: a microbial genome annotation system supported by synteny results
Vallenet, David, Labarre, Laurent, Rouy, Zoé, Barbe, Valérie, Bocs, Stéphanie, Cruveiller, Stéphane, ...
Magnifying Genomes (MaGe) is a microbial genome annotation system based on a relational database containing information on bacterial genomes, as well as a web interface to achieve genome annotation...
Comparative Sequence Analysis of the X-Inactivation Center Region in Mouse, Human, and Bovine
Chureau, Corinne, Prissette, Marine, Bourdet, Agnès, Barbe, Valérie, Cattolico, Laurence, Jones, Louis, ...
We have sequenced to high levels of accuracy 714-kb and 233-kb regions of the mouse and bovine X-inactivation centers (Xic), respectively, centered on the Xist gene. This has provided the basis for a...
Marenda, Marc, Barbe, Valérie, Gourgues, Géraldine, Mangenot, Sophie, Sagne, Evelyne, Citti, Christine
An integrative conjugative element, ICEA, was characterized in Mycoplasma agalactiae strain 5632, in which it occurs as multiple chromosomal copies and as a free circular form. The distribution of...
Choulet, Frédéric, Gallois, Alexandre, Aigle, Bertrand, Mangenot, Sophie, Gerbaud, Claude, Truong, Chantal, ...
The sequences of the terminal inverted repeats (TIRs) ending the linear chromosomal DNA of two Streptomyces ambofaciens strains, ATCC23877 and DSM40697 (198 kb and 213 kb, respectively), were...
A Tale of Two Oxidation States: Bacterial Colonization of Arsenic-Rich Environments
Muller, Daniel, Médigue, Claudine, Koechler, Sandrine, Barbe, Valérie, Barakat, Mohamed, Talla, Emmanuel, ...
Microbial biotransformations have a major impact on contamination by toxic elements, which threatens public health in developing and industrial countries. Finding a means of preserving natural...
Being Pathogenic, Plastic, and Sexual while Living with a Nearly Minimal Bacterial Genome
Sirand-Pugnet, Pascal, Lartigue, Carole, Marenda, Marc, Jacob, Daniel, Barré, Aurélien, Barbe, Valérie, ...
Mycoplasmas are commonly described as the simplest self-replicating organisms, whose evolution was mainly characterized by genome downsizing with a proposed evolutionary scenario similar to that of...
Comparative Analysis of Acinetobacters: Three Genomes for Three Lifestyles
Vallenet, David, Nordmann, Patrice, Barbe, Valérie, Poirel, Laurent, Mangenot, Sophie, Bataille, Elodie, ...
Acinetobacter baumannii is the source of numerous nosocomial infections in humans and therefore deserves close attention as multidrug or even pandrug resistant strains are increasingly being...
Plainvert, Céline, Bidet, Philippe, Peigne, Chantal, Barbe, Valérie, Médigue, Claudine, Denamur, Erick, ...
A new highly pathogenic clone of Escherichia coli meningitis strains harboring the unusual serogroup O45 has recently emerged in France. To gain insight into the pathogenicity of this new clone, we...
High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies
Aury, Jean-Marc, Cruaud, Corinne, Barbe, Valérie, Rogier, Odile, Mangenot, Sophie, Samson, Gaelle, ...
Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
Touchon, Marie, Hoede, Claire, Tenaillon, Olivier, Barbe, Valérie, Baeriswyl, Simon, Bidet, Philippe, ...
The Escherichia coli species represents one of the best-studied model organisms, but also encompasses a variety of commensal and pathogenic strains that diversify by high rates of genetic change. We...
Genome sequence of the β-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia
Amadou, Claire, Pascal, Géraldine, Mangenot, Sophie, Glew, Michelle, Bontemps, Cyril, Capela, Delphine, ...
We report the first complete genome sequence of a β-proteobacterial nitrogen-fixing symbiont of legumes, Cupriavidus taiwanensis LMG19424. The genome consists of two chromosomes of size 3.42 Mb and...
De Groot, Arjan, Dulermo, Rémi, Ortet, Philippe, Blanchard, Laurence, Guérin, Philippe, Fernandez, Bernard, ...
To better understand adaptation to harsh conditions encountered in hot arid deserts, we report the first complete genome sequence and proteome analysis of a bacterium, Deinococcus deserti VCD115,...
Vuilleumier, Stéphane, Chistoserdova, Ludmila, Lee, Ming-Chun, Bringel, Françoise, Lajus, Aurélie, Zhou, Yang, ...
Non Mycobacterial Virulence Genes in the Genome of the Emerging Pathogen Mycobacterium abscessus
Ripoll, Fabienne, Pasek, Sophie, Schenowitz, Chantal, Dossat, Carole, Barbe, Valérie, Rottman, Martin, ...
Mycobacterium abscessus is an emerging rapidly growing mycobacterium (RGM) causing a pseudotuberculous lung disease to which patients with cystic fibrosis (CF) are particularly susceptible. We report...
Pereyre, Sabine, Sirand-Pugnet, Pascal, Beven, Laure, Charron, Alain, Renaudin, Hélène, Barré, Aurélien, ...
Mycoplasma hominis is an opportunistic human mycoplasma. Two other pathogenic human species, M. genitalium and Ureaplasma parvum, reside within the same natural niche as M. hominis: the urogenital...
Comparative genomics of protoploid Saccharomycetaceae
Souciet, Jean-Luc, Dujon, Bernard, Gaillardin, Claude, Johnston, Mark, Baret, Philippe V., Cliften, Paul, ...
Our knowledge of yeast genomes remains largely dominated by the extensive studies on Saccharomyces cerevisiae and the consequences of its ancestral duplication, leaving the evolution of the entire...