The value of avian genomics to the conservation of wildlife (2009)
Romanov, Michael N, Tuttle, Elaina M, Houck, Marlys L, Modi, William S, Chemnick, Leona G, Korody, Marisa L, ...
Abstract Background Genomic studies in non-domestic avian models, such as the California condor and white-throated sparrow, can lead to more comprehensive conservation plans and provide clues for...
Transcriptome analysis for Caenorhabditis elegansbased on novel expressed sequence tags (2008)
Shin, Heesun, Hirst, Martin, Bainbridge, Matthew N, Magrini, Vincent, Mardis, Elaine, Moerman, Donald G, ...
Abstract Background We have applied a high-throughput pyrosequencing technology for transcriptome profiling of Caenorhabditis elegans in its first larval stage. Using this approach, we have generated...
Conifers have a unique small RNA silencing signature (2008)
Downloaded From, Elena V. Dolgosheina, Ryan D. Morin, Gozde Aksay, S. Cenk Sahinalp, Vincent Magrini, ...
Access the most recent version at doi: 10.1261/rna.1052008
Downloaded From, Ryan D. Morin, Gozde Aksay, Elena Dolgosheina, H. Alex, Er Ebhardt, ...
Comparative analysis of the small RNA transcriptomes of Pinus
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa (2008)
Morin, Ryan D., Aksay, Gozde, Dolgosheina, Elena, Ebhardt, H. Alexander, Magrini, Vincent, Mardis, Elaine R., ...
The diversity of microRNAs and small-interfering RNAs has been extensively explored within angiosperms by focusing on a few key organisms such as Oryza sativa and Arabidopsis thaliana. A deeper...
Gallus GBrowse: a unified genomic database for the chicken (2008)
Schmidt, Carl J., Romanov, Michael, Ryder, Oliver, Magrini, Vincent, Hickenbotham, Matthew, Glasscock, Jarret, ...
Gallus GBrowse (http://birdbase.net/cgi-bin/gbrowse/gallus/) provides online access to genomic and other information about the chicken, Gallus gallus. The information provided by this resource...
Conifers have a unique small RNA silencing signature (2008)
Dolgosheina, Elena V., Morin, Ryan D., Aksay, Gozde, Sahinalp, S. Cenk, Magrini, Vincent, Mardis, Elaine R., ...
Plants produce small RNAs to negatively regulate genes, viral nucleic acids, and repetitive elements at either the transcriptional or post-transcriptional level in a process that is referred to as...
BMC Biology BioMed Central (2008)
Heesun Shin, Martin Hirst, Matthew N Bainbridge, Vincent Magrini, Elaine Mardis, Donald G Moerman, ...
Research article Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags
Extending assembly of short DNA sequences to handle error (2007)
Jeck, William R., Reinhardt, Josephine A., Baltrus, David A., Hickenbotham, Matthew T., Magrini, Vincent, Mardis, Elaine R., ...
Inexpensive de novo genome sequencing, particularly in organisms with small genomes, is now possible using several new sequencing technologies. Some of these technologies such as that from Illumina's...
Bainbridge, Matthew N, Warren, René L, Hirst, Martin, Romanuik, Tammy, Zeng, Thomas, Go, Anne, ...
Abstract Background High throughput sequencing-by-synthesis is an emerging technology that allows the rapid production of millions of bases of data. Although the sequence reads are short, they can...
The repetitive landscape of the chicken genome (2005)
Wicker, Thomas, Robertson, Jon S., Schulze, Stefan R., Feltus, F. Alex, Magrini, Vincent, Morrison, Jason A., ...
Cot-based cloning and sequencing (CBCS) is a powerful tool for isolating and characterizing the various repetitive components of any genome, combining the established principles of DNA reassociation...
Fosmid-Based Physical Mapping of the Histoplasma capsulatum Genome (2004)
Magrini, Vincent, Warren, Wesley C., Wallis, John, Goldman, William E., Xu, Jian, Mardis, Elaine R., ...
A fosmid library representing 10-fold coverage of the Histoplasma capsulatum G217B genome was used to construct a restriction-based physical map. The data obtained from three restriction endonuclease...
The Repetitive Landscape of the Chicken Genome (2004)
Wicker, Thomas, Robertson, Jon S., Schulze, Stefan R., Feltus, F. Alex, Magrini, Vincent, Morrison, Jason A., ...
Cot-based cloning and sequencing (CBCS) is a powerful tool for isolating and characterizing the various repetitive components of any genome, combining the established principles of DNA reassociation...
The Repetitive Landscape of the Chicken Genome (2004)
Wicker, Thomas, Robertson, Jon S., Schulze, Stefan R., Feltus, F. Alex, Magrini, Vincent, Morrison, Jason A., ...
Cot-based cloning and sequencing (CBCS) is a powerful tool for isolating and characterizing the various repetitive components of any genome, combining the established principles of DNA reassociation...
Viral Discovery and Sequence Recovery Using DNA Microarrays (2003)
David Wang, Anatoly Urisman, Yu-Tsueng Liu, Michael Springer, Thomas G. Ksiazek, Dean D. Erdman, ...
Know your enemy. Description of the ‘virus gene chip’ that helped to classify the SARS virus as a novel coronavirus.
Viral Discovery and Sequence Recovery Using DNA Microarrays (2003)
David Wang, Anatoly Urisman, Yu-Tsueng Liu, Michael Springer, Thomas G. Ksiazek, Dean D. Erdman, ...
Because of the constant threat posed by emerging infectious diseases and the limitations of existing approaches used to identify new pathogens, there is a great demand for new technological methods...
Magrini, Vincent, Creighton, Chad, Youderian, Philip
Like most temperate bacteriophages, phage Mx8 integrates into a preferred locus on the genome of its host, Myxococcus xanthus, by a mechanism of site-specific recombination. The Mx8 int-attP genes...
Magrini, Vincent, Storms, Michael L., Youderian, Philip
Temperate Myxococcus xanthus phage Mx8 integrates into the attB locus of the M. xanthus genome. The phage attachment site, attP, is required in cis for integration and lies within the int (integrase)...
Genetic Determinants of Immunity and Integration of Temperate Myxococcus xanthus Phage Mx8
Salmi, Daniel, Magrini, Vincent, Hartzell, Patricia L., Youderian, Philip
An 8.1-kb fragment of the temperate Myxococcus xanthus phage Mx8 genome, when cloned into a plasmid vector, permits site-specific integration of the plasmid and confers superinfection immunity....
Magrini, Vincent, Creighton, Chad, White, David, Hartzell, Patricia L., Youderian, Philip
Plasmids with the aadA gene from plasmid R100, which confers resistance to the aminoglycosides spectinomycin and streptomycin in Escherchia coli, can be introduced into wild-type Myxococcus xanthus,...
Viral Discovery and Sequence Recovery Using DNA Microarrays
Wang, David, Urisman, Anatoly, Liu, Yu-Tsueng, Springer, Michael, Ksiazek, Thomas G, Erdman, Dean D, ...
Because of the constant threat posed by emerging infectious diseases and the limitations of existing approaches used to identify new pathogens, there is a great demand for new technological methods...
Fosmid-Based Physical Mapping of the Histoplasma capsulatum Genome
Magrini, Vincent, Warren, Wesley C., Wallis, John, Goldman, William E., Xu, Jian, Mardis, Elaine R., ...
A fosmid library representing 10-fold coverage of the Histoplasma capsulatum G217B genome was used to construct a restriction-based physical map. The data obtained from three restriction endonuclease...
The repetitive landscape of the chicken genome
Wicker, Thomas, Robertson, Jon S., Schulze, Stefan R., Feltus, F. Alex, Magrini, Vincent, Morrison, Jason A., ...
Cot-based cloning and sequencing (CBCS) is a powerful tool for isolating and characterizing the various repetitive components of any genome, combining the established principles of DNA reassociation...
Chen, Swaine L., Hung, Chia-Seui, Xu, Jian, Reigstad, Christopher S., Magrini, Vincent, Sabo, Aniko, ...
Escherichia coli is a model laboratory bacterium, a species that is widely distributed in the environment, as well as a mutualist and pathogen in its human hosts. As such, E. coli represents an...
Magrini, Vincent, Creighton, Chad, Youderian, Philip
Like most temperate bacteriophages, phage Mx8 integrates into a preferred locus on the genome of its host, Myxococcus xanthus, by a mechanism of site-specific recombination. The Mx8 int-attP genes...
Magrini, Vincent, Storms, Michael L., Youderian, Philip
Temperate Myxococcus xanthus phage Mx8 integrates into the attB locus of the M. xanthus genome. The phage attachment site, attP, is required in cis for integration and lies within the int (integrase)...
Genetic Determinants of Immunity and Integration of Temperate Myxococcus xanthus Phage Mx8
Salmi, Daniel, Magrini, Vincent, Hartzell, Patricia L., Youderian, Philip
An 8.1-kb fragment of the temperate Myxococcus xanthus phage Mx8 genome, when cloned into a plasmid vector, permits site-specific integration of the plasmid and confers superinfection immunity....
Magrini, Vincent, Creighton, Chad, White, David, Hartzell, Patricia L., Youderian, Philip
Plasmids with the aadA gene from plasmid R100, which confers resistance to the aminoglycosides spectinomycin and streptomycin in Escherchia coli, can be introduced into wild-type Myxococcus xanthus,...
Viral Discovery and Sequence Recovery Using DNA Microarrays
Wang, David, Urisman, Anatoly, Liu, Yu-Tsueng, Springer, Michael, Ksiazek, Thomas G, Erdman, Dean D, ...
Because of the constant threat posed by emerging infectious diseases and the limitations of existing approaches used to identify new pathogens, there is a great demand for new technological methods...
Fosmid-Based Physical Mapping of the Histoplasma capsulatum Genome
Magrini, Vincent, Warren, Wesley C., Wallis, John, Goldman, William E., Xu, Jian, Mardis, Elaine R., ...
A fosmid library representing 10-fold coverage of the Histoplasma capsulatum G217B genome was used to construct a restriction-based physical map. The data obtained from three restriction endonuclease...
The repetitive landscape of the chicken genome
Wicker, Thomas, Robertson, Jon S., Schulze, Stefan R., Feltus, F. Alex, Magrini, Vincent, Morrison, Jason A., ...
Cot-based cloning and sequencing (CBCS) is a powerful tool for isolating and characterizing the various repetitive components of any genome, combining the established principles of DNA reassociation...
Chen, Swaine L., Hung, Chia-Seui, Xu, Jian, Reigstad, Christopher S., Magrini, Vincent, Sabo, Aniko, ...
Escherichia coli is a model laboratory bacterium, a species that is widely distributed in the environment, as well as a mutualist and pathogen in its human hosts. As such, E. coli represents an...
Gallus GBrowse: a unified genomic database for the chicken
Schmidt, Carl J., Romanov, Michael, Ryder, Oliver, Magrini, Vincent, Hickenbotham, Matthew, Glasscock, Jarret, ...
Gallus GBrowse (http://birdbase.net/cgi-bin/gbrowse/gallus/) provides online access to genomic and other information about the chicken, Gallus gallus. The information provided by this resource...
Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags
Shin, Heesun, Hirst, Martin, Bainbridge, Matthew N, Magrini, Vincent, Mardis, Elaine, Moerman, Donald G, ...
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
Morin, Ryan D., Aksay, Gozde, Dolgosheina, Elena, Ebhardt, H. Alexander, Magrini, Vincent, Mardis, Elaine R., ...
The diversity of microRNAs and small-interfering RNAs has been extensively explored within angiosperms by focusing on a few key organisms such as Oryza sativa and Arabidopsis thaliana. A deeper...
Conifers have a unique small RNA silencing signature
Dolgosheina, Elena V., Morin, Ryan D., Aksay, Gozde, Sahinalp, S. Cenk, Magrini, Vincent, Mardis, Elaine R., ...
Plants produce small RNAs to negatively regulate genes, viral nucleic acids, and repetitive elements at either the transcriptional or post-transcriptional level in a process that is referred to as...
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
Mahowald, Michael A., Rey, Federico E., Seedorf, Henning, Turnbaugh, Peter J., Fulton, Robert S., Wollam, Aye, ...
The adult human distal gut microbial community is typically dominated by 2 bacterial phyla (divisions), the Firmicutes and the Bacteroidetes. Little is known about the factors that govern the...