Wilson A. Silva

A score system for quality evaluation of RNA sequence tags: an improvement for gene expression profiling (2009)

Pinheiro, Daniel G, Galante, Pedro AF, De Souza, Sandro J, Zago, Marco A, Silva, Wilson A

Abstract Background High-throughput molecular approaches for gene expression profiling, such as Serial Analysis of Gene Expression (SAGE), Massively Parallel Signature Sequencing (MPSS) or...

Searching for molecular markers in head and neck squamous cell carcinomas (HNSCC) by statistical and bioinformatic analysis of larynx-derived SAGE libraries (2008)

Silveira, Nelson JF, Varuzza, Leonardo, Machado-Lima, Ariane, Lauretto, Marcelo S, Pinheiro, Daniel G, Rodrigues, Rodrigo V, ...

Abstract Background Head and neck squamous cell carcinoma (HNSCC) is one of the most common malignancies in humans. The average 5-year survival rate is one of the lowest among aggressive cancers,...

Research Article Evaluation of gene selection metrics for tumor cell classification (2008)

Katti Faceli, Wilson A. Silva

www.sbg.org.br Gene expression profiles contain the expression level of thousands of genes. Depending on the issue under investigation, this large amount of data makes analysis impractical. Thus, it...

BMC Medical Genomics This Provisional (2008)

Leonardo Varuzza, Marcelo S Lauretto, Daniel G Pinheiro, Rodrigo V Rodrigues, Patricia Severino, Francisco G Nobrega, ...

PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. Searching for molecular markers in head and neck squamous...

Evaluation of Gene Selection Metrics for Tumor Cell Classification (2007)

Katti Faceli, Matemáticas Computação, Wilson A. Silva

Gene expression profiles contain the expression level of thousands of genes. Depending on the issue under investigation, this large amount of data makes the analysis impractical. Thus, it is...

Identification of unannotated exons of low abundance transcripts in Drosophila melanogasterand cloning of a new serine protease gene upregulated upon injury (2007)

Maia, Rafaela M, Valente, Valeria, Cunha, Marco AV, Sousa, Josane F, Araujo, Daniela D, Silva, Wilson A, ...

Abstract Background The sequencing of the D.melanogaster genome revealed an unexpected small number of genes (~ 14,000) indicating that mechanisms acting on generation of transcript diversity must...

2 Centro Regional de Hemoterapia, (2006)

Rodrigo M. Br, Silvana Giuliatti, Marco A. Zago, Wilson A. Silva, Ribeirão Preto, ...

ABSTRACT. Serial analysis of gene expression (SAGE) technology produces large sets of interesting genes that are difficult to analyze directly. Bioinformatics tools are needed to interpret the...

The use of Open Reading frame ESTs (ORESTES) for analysis of the honey bee transcriptome (2004)

Nunes, Francis MF, Valente, Valeria, Sousa, Josane F, Cunha, Marco AV, Pinheiro, Daniel G, Maia, Rafaela M, ...

Abstract Background The ongoing efforts to sequence the honey bee genome require additional initiatives to define its transcriptome. Towards this end, we employed the Open Reading frame ESTs...

Gene Selection for Tumor Cell Classification (2003)

Katti Faceli, Wilson A. Silva Jr.

Gene expression profiles contain the expression level of thousands of genes. Depending on the issue under investigation, this large amount of data makes the analysis impractical. Thus, it is...

HB D Los Angeles in a Brazilian family (2001)

Leoneli,Guilherme G., Melo,Silma M.A., Zago,Marco A., Silva Jr.,Wilson A., Bonini-Domingos,Cláudia R.

Inherited disorders of hemoglobin, the most common monogenic disease, are now well understood at the molecular level, knowledge, which has led to considerable improvements in their control and...

The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome

Camargo, Anamaria A., Samaia, Helena P. B., Dias-Neto, Emmanuel, Simão, Daniel F., Migotto, Italo A., Briones, Marcelo R. S., ...

Open reading frame expressed sequences tags (ORESTES) differ from conventional ESTs by providing sequence data from the central protein coding portion of transcripts. We generated a total of 696,745...

The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome

Camargo, Anamaria A., Samaia, Helena P. B., Dias-Neto, Emmanuel, Simão, Daniel F., Migotto, Italo A., Briones, Marcelo R. S., ...

Open reading frame expressed sequences tags (ORESTES) differ from conventional ESTs by providing sequence data from the central protein coding portion of transcripts. We generated a total of 696,745...

Mitochondrial Population Genomics Supports a Single Pre-Clovis Origin with a Coastal Route for the Peopling of the Americas

Fagundes, Nelson J.R., Kanitz, Ricardo, Eckert, Roberta, Valls, Ana C.S., Bogo, Mauricio R., Salzano, Francisco M., ...

It is well accepted that the Americas were the last continents reached by modern humans, most likely through Beringia. However, the precise time and mode of the colonization of the New World remain...

SAGE analysis demonstrates increased expression of TOSO contributing to Fas-mediated resistance in CLL

Proto-Siqueira, Rodrigo, Panepucci, Rodrigo A., Careta, Francisco P., Lee, Abigail, Clear, Andrew, Morris, Kelly, ...

To identify novel genes involved in the molecular pathogenesis of chronic lymphocytic leukemia (CLL) we performed a serial analysis of gene expression (SAGE) in CLL cells, and compared this with...