Tuning parameter selection for penalized likelihood estimation of inverse covariance matrix (2009)
Gao, Xin, Pu, Daniel Q., Wu, Yuehua, Xu, Hong
In a Gaussian graphical model, the conditional independence between two variables are characterized by the corresponding zero entries in the inverse covariance matrix. Maximum likelihood method using...
Wang, Jun, Gao, Xin, Yang, Xianyan, Gan, Yilai, Weng, Wenjian, Gou, Zhongru
The shell wall-functionalized siliceous hollow nanospheres (SHNs) with functional molecules represent an important class of nanocarriers for a rich range of potential applications. Herein, a...
Improving consensus contact prediction via server correlation reduction (2009)
Gao, Xin, Bu, Dongbo, Xu, Jinbo, Li, Ming
Abstract Background Protein inter-residue contacts play a crucial role in the determination and prediction of protein structures. Previous studies on contact prediction indicate that although...
Kiss, Joshua E, Gao, Xin, Krepp, Joseph M, Hawdon, John M
Abstract Background Third-stage infective larvae (L3) of hookworms are in an obligatory state of developmental arrest that ends upon entering the definitive host, where they receive a signal that...
Transition Dependency: A Gene-Gene Interaction Measure for Times Series Microarray Data (2009)
Gene-Gene dependency plays a very important role in system biology as it pertains to the crucial understanding of different biological mechanisms. Time-course microarray data provides a new platform...
Asymptotic Behavior of Tail Density for Sum of Correlated Lognormal Variables (2009)
We consider the asymptotic behavior of a probability density function for the sum of any two lognormally distributed random variables that are nontrivially correlated. We show that both the left and...
PICKY: a novel SVD-based NMR spectra peak picking method (2009)
Alipanahi, Babak, Gao, Xin, Karakoc, Emre, Donaldson, Logan, Li, Ming
Motivation: Picking peaks from experimental NMR spectra is a key unsolved problem for automated NMR protein structure determination. Such a process is a prerequisite for resonance assignment, nuclear...
Aurrecoechea, Cristina, Brestelli, John, Brunk, Brian P., Carlton, Jane M., Dommer, Jennifer, Fischer, Steve, ...
GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the...
PlasmoDB: a functional genomic database for malaria parasites (2009)
Aurrecoechea, Cristina, Brestelli, John, Brunk, Brian P., Dommer, Jennifer, Fischer, Steve, Gajria, Bindu, ...
PlasmoDB (http://PlasmoDB.org) is a functional genomic database for Plasmodium spp. that provides a resource for data analysis and visualization in a gene-by-gene or genome-wide scale. PlasmoDB...
Transition Dependency: A Gene-Gene Interaction Measure for Times Series Microarray Data (2009)
Gene-Gene dependency plays a very important role in system biology as it pertains to the crucial understanding of different biological mechanisms. Time-course microarray data provides a new platform...
Asymptotic Behavior of Tail Density for Sum of Correlated Lognormal Variables (2009)
We consider the asymptotic behavior of a probability density function for the sum of any two lognormally distributed random variables that are nontrivially correlated. We show that both the left and...
Aurrecoechea, Cristina, Brestelli, John, Brunk, Brian P., Carlton, Jane M., Dommer, Jennifer, Fischer, Steve, ...
© 2008 The Authors. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License. The definitive version was published in Nucleic Acids...
An Evaluation of Multiple Approaches For Database Federation in Life Science (2008)
Zhiming Wang, Xin Gao, Congzhou He, John A. Miller, Jessica C, Mark Heiges, ...
Between technological breakthrough and new computational approaches, the amount of biological data is increasing explosively. Till to 2007, there are 968 biological databases. To provide biologists...
FragQA: predicting local fragment quality of a sequence-structure alignment (2008)
Xin Gao, Dongbo Bu, Shuai Cheng, Li Jinbo, Xu Ming Li
Although protein structure prediction has made great progress in recent years, a protein model derived from automated prediction methods is subject to various errors. As methods for structure...
Rapid and Accurate Protein Side Chain Prediction Using Local Backbone Information Only (2008)
Jing Zhang, Xin Gao, Jinbo Xu, Ming Li
Abstract. High-accuracy protein structure modeling demands on accurate and very fast side chain prediction since such a procedure must be repeatedly called at each step of structure refinement. Many...
A space-efficient wireless mesh network : architecture, frequency planning and routing (2008)
Thesis (M.Phil.)--Hong Kong University of Science and Technology, 2008
ToxoDB: an integrated Toxoplasma gondii database resource (2008)
Gajria, Bindu, Bahl, Amit, Brestelli, John, Dommer, Jennifer, Fischer, Steve, Gao, Xin, ...
ToxoDB (http://ToxoDB.org) is a genome and functional genomic database for the protozoan parasite Toxoplasma gondii. It incorporates the sequence and annotation of the T. gondii ME49 strain, as well...
Designing succinct structural alphabets (2008)
Li, Shuai Cheng, Bu, Dongbo, Gao, Xin, Xu, Jinbo, Li, Ming
Motivation: The 3D structure of a protein sequence can be assembled from the substructures corresponding to small segments of this sequence. For each small sequence segment, there are only a few more...
This project provides an audio notification about nearby tourism place to visit (named sight in this thesis), a chapter based Audio Books related to the current sight and involving Digital Library to...
This project provides an audio notification about nearby tourism place to visit (named sight in this thesis), a chapter based Audio Books related to the current sight and involving Digital Library to...
This project provides an audio notification about nearby tourism place to visit (named sight in this thesis), a chapter based Audio Books related to the current sight and involving Digital Library to...
This project provides an audio notification about nearby tourism place to visit (named sight in this thesis), a chapter based Audio Books related to the current sight and involving Digital Library to...
This project provides an audio notification about nearby tourism place to visit (named sight in this thesis), a chapter based Audio Books related to the current sight and involving Digital Library to...
This project provides an audio notification about nearby tourism place to visit (named sight in this thesis), a chapter based Audio Books related to the current sight and involving Digital Library to...
The Effects of Outcomes-Driven Authentic Assessment on Classroom Quality (2007)
Rena Hallam, Jennifer Grisham-Brown, Xin Gao, Robyn Brookshire
Twenty-six Head Start preschool classrooms participated in a yearlong intervention designed to link the Head Start Child Outcomes Framework with authentic assessment practices. Teachers in...
Zhiming Wang, Xin Gao, Congzhou He, John A. Miller, Jessica C. Kissinger, Mark Heiges, ...
Abstract- Between technological breakthroughs and new computational approaches, the amount of biological data is increasing explosively. Currently, there are many data integration approaches that can...
This project provides an audio notification about nearby tourism place to visit (named sight in this thesis), a chapter based Audio Books related to the current sight and involving Digital Library to...
This project provides an audio notification about nearby tourism place to visit (named sight in this thesis), a chapter based Audio Books related to the current sight and involving Digital Library to...
This project provides an audio notification about nearby tourism place to visit (named sight in this thesis), a chapter based Audio Books related to the current sight and involving Digital Library to...
This project provides an audio notification about nearby tourism place to visit (named sight in this thesis), a chapter based Audio Books related to the current sight and involving Digital Library to...
This project provides an audio notification about nearby tourism place to visit (named sight in this thesis), a chapter based Audio Books related to the current sight and involving Digital Library to...
This project provides an audio notification about nearby tourism place to visit (named sight in this thesis), a chapter based Audio Books related to the current sight and involving Digital Library to...
Preparation of nanomagnetic absorbent for partition coefficient measurement (2006)
Tsang, Shik Chi, Yu, Chih Hao, Gao, Xin, Tam, Kin Y.
In this paper, we report a new method based on supercritical carbon dioxide (scCO2) to fill and distribute the porous magnetic nanoparticles with n-octanol in a homogeneous manner. The high...
Title from PDF title page (viewed on December 27, 2006)
Tracing of inernal layers in radar echograms from a Greenland study region (2006)
Thesis (M.S.) University of Missouri-Columbia, 2006.
Thesis (M.S.)--Iowa State University, 2006.
The TIP/Greenstone Bridge: A Service for Mobile Location-Based Access to Digital Libraries (2006)
Hinze, Annika, Gao, Xin, Bainbridge, David
This paper introduces the first combination of a mobile tourist guide with a digital library. Location-based search allows for access to a rich set of materials with cross references between...
Signs of long-term glaciological processes and past ice sheet structure are preserved in the internal layer signatures of the Greenland ice sheet. Internal layer data have been collected over a...
Motivation: The parametric F-test has been widely used in the analysis of factorial microarray experiments to assess treatment effects. However, the normality assumption is often untenable for...
CryptoDB: a Cryptosporidium bioinformatics resource update (2006)
Heiges, Mark, Wang, Haiming, Robinson, Edward, Aurrecoechea, Cristina, Gao, Xin, Kaluskar, Nivedita, ...
The database, CryptoDB (http://CryptoDB.org), is a community bioinformatics resource for the AIDS-related apicomplexan-parasite, Cryptosporidium. CryptoDB integrates whole genome sequence and...
Abstract Background Numerous nonparametric approaches have been proposed in literature to detect differential gene expression in the setting of two user-defined groups. However, there is a lack of...
interaction effects in multi-factorial microarray experiments (2005)
Background: Numerous nonparametric approaches have been proposed in literature to detect differential gene expression in the setting of two user-defined groups. However, there is a lack of...
Brian K. Petroff, Claire R. Croutch, Dora M. Hunter, Margaret E. Wierman, Xin Gao
2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) induces aberrant release of gonadotropins, FSH, and LH and blocks ovulation during induced ovarian follicular development in rats by an unknown mechanism....
Rank tests for interaction in two-way layouts with application in genetic analysis. (2003)
Thesis (Ph.D.)--University of Ottawa, 2003.
Thesis (M.S.)--University of Kansas, Pharmacology, Toxicology and Therapeutics, 1998.
Systematik der Verbindungen-ein beitrag zum methodischen Konstruieren / (1983)
Thesis (doctoral)--Rheinisch-Westfälische Technische Hochschule Aachen, 1983.
Transformation of Sib-Pair Values for the Haseman-Elston Method
Wang, Daolong, Lin, Shili, Cheng, Rong, Gao, Xin, Wright, Fred A.
The squared sib-pair phenotype difference (SQD) has been used as a dependent variable in the Haseman-Elston (H-E) regression quantitative-trait locus (QTL) linkage method, but it has been shown that...
CryptoDB: a Cryptosporidium bioinformatics resource update
Heiges, Mark, Wang, Haiming, Robinson, Edward, Aurrecoechea, Cristina, Gao, Xin, Kaluskar, Nivedita, ...
The database, CryptoDB (), is a community bioinformatics resource for the AIDS-related apicomplexan-parasite, Cryptosporidium. CryptoDB integrates whole genome sequence and annotation with expressed...
Cheng, Rong, Ma, Jennie Z, Wright, Fred A, Lin, Shili, Gao, Xin, Wang, Daolong, ...
As the speed and efficiency of genotyping single-nucleotide polymorphisms (SNPs) increase, using the SNP map, it becomes possible to evaluate the extent to which a common haplotype contributes to the...
Transformation of Sib-Pair Values for the Haseman-Elston Method
Wang, Daolong, Lin, Shili, Cheng, Rong, Gao, Xin, Wright, Fred A.
The squared sib-pair phenotype difference (SQD) has been used as a dependent variable in the Haseman-Elston (H-E) regression quantitative-trait locus (QTL) linkage method, but it has been shown that...
CryptoDB: a Cryptosporidium bioinformatics resource update
Heiges, Mark, Wang, Haiming, Robinson, Edward, Aurrecoechea, Cristina, Gao, Xin, Kaluskar, Nivedita, ...
The database, CryptoDB (), is a community bioinformatics resource for the AIDS-related apicomplexan-parasite, Cryptosporidium. CryptoDB integrates whole genome sequence and annotation with expressed...
Cheng, Rong, Ma, Jennie Z, Wright, Fred A, Lin, Shili, Gao, Xin, Wang, Daolong, ...
As the speed and efficiency of genotyping single-nucleotide polymorphisms (SNPs) increase, using the SNP map, it becomes possible to evaluate the extent to which a common haplotype contributes to the...
Liu, Shuwei, Gao, Xin, Xia, Guangmin
Bread wheat quality is mainly correlated with high molecular weight glutenin subunits (HMW-GS) of endosperm. The number of HMW-GS alleles with good processing quality is limited in bread wheat...
ToxoDB: an integrated Toxoplasma gondii database resource
Gajria, Bindu, Bahl, Amit, Brestelli, John, Dommer, Jennifer, Fischer, Steve, Gao, Xin, ...
ToxoDB (http://ToxoDB.org) is a genome and functional genomic database for the protozoan parasite Toxoplasma gondii. It incorporates the sequence and annotation of the T. gondii ME49 strain, as well...
Mechanisms of skeletal muscle injury and repair revealed by gene expression studies in mouse models
Warren, Gordon L, Summan, Mukesh, Gao, Xin, Chapman, Rebecca, Hulderman, Tracy, Simeonova, Petia P
Common acute injuries to skeletal muscle can lead to significant pain and disability. The current therapeutic approaches for treating muscle injuries are dependent on the clinical severity but not on...
Transition Dependency: A Gene-Gene Interaction Measure for Times Series Microarray Data
Gao, Xin, Pu, Daniel Q., Song, Peter X.-K.
Gene-Gene dependency plays a very important role in system biology as it pertains to the crucial understanding of different biological mechanisms. Time-course microarray data provides a new platform...
Aurrecoechea, Cristina, Brestelli, John, Brunk, Brian P., Carlton, Jane M., Dommer, Jennifer, Fischer, Steve, ...
GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the...
PlasmoDB: a functional genomic database for malaria parasites
Aurrecoechea, Cristina, Brestelli, John, Brunk, Brian P., Dommer, Jennifer, Fischer, Steve, Gajria, Bindu, ...
PlasmoDB (http://PlasmoDB.org) is a functional genomic database for Plasmodium spp. that provides a resource for data analysis and visualization in a gene-by-gene or genome-wide scale. PlasmoDB...
PICKY: a novel SVD-based NMR spectra peak picking method
Alipanahi, Babak, Gao, Xin, Karakoc, Emre, Donaldson, Logan, Li, Ming
Motivation: Picking peaks from experimental NMR spectra is a key unsolved problem for automated NMR protein structure determination. Such a process is a prerequisite for resonance assignment, nuclear...
Designing succinct structural alphabets
Li, Shuai Cheng, Bu, Dongbo, Gao, Xin, Xu, Jinbo, Li, Ming
Motivation: The 3D structure of a protein sequence can be assembled from the substructures corresponding to small segments of this sequence. For each small sequence segment, there are only a few more...