Y. Machida

Publication List Details

Period

1991 - 2009

Number

40

Co-Authors

Possible Sign-Reversing s-Wave Superconductivity in Co-Doped BaFe2As2 Proved by Thermal Transport Measurements (2009)

Machida, Y., Tomokuni, K., Isono, T., Izawa, K., Nakajima, Y., Tamegai, T.

Thermal transport measurements have been performed on single-crystalline Co-doped BaFe2As2 down to 0.1 K and under magnetic fields up to 7 T. Significant peak anomalies are observed in both thermal...

Weak quasistatic magnetism in the frustrated Kondo lattice Pr_2Ir_2O_7 (2008)

MacLaughlin, D. E., Ohta, Y., Machida, Y., Nakatsuji, S., Luke, G. M., Ishida, K., ...

Muon spin relaxation experiments have been performed in the pyrochlore iridate Pr_2Ir_2O_7 for temperatures in the range 0.025-250 K. Kubo-Toyabe relaxation functions are observed up to > 200 K,...

Study of superconducting properties of MgB2 (2002)

Machida, Y., Sasaki, S., Fujii, H., Furuyama, M., Kakeya, I., Kadowaki, K.

We synthesized single crystalline and policrystalline MgB_2 under ambient pressures. The single crystals of MgB_2 were of good quality, where the crystal structure refinements were successfully...

Gaidropsarus pacificus (Temminck & Schlegel), a junior synonym of Rhinonemus cimbrius (Linnaeus) (Pisces: Gadiformes: Gadidae) (1991)

Machida, Y.

The gadid fish, Gaidropsarus pacificus, originally described as Motella pacifica by Temminck & Schlegel (1842) is reduced to a junior synonym of Rhinonemus cimbrius (Linnaeus, 1758). Confusion on the...

Cutting activates a 46-kilodalton protein kinase in plants.

Usami, S, Banno, H, Ito, Y, Nishihama, R, Machida, Y

Using SDS/polyacrylamide gels that contained myelin basic protein, we identified a 46-kDa protein kinase in tobacco that is transiently activated by cutting. Although the activity of the kinase was...

Molecular characterization of a short interspersed repetitive element from tobacco that exhibits sequence homology to specific tRNAs.

Yoshioka, Y, Matsumoto, S, Kojima, S, Ohshima, K, Okada, N, Machida, Y

We have characterized a family of tRNA-derived short interspersed repetitive elements (SINEs) in the tobacco genome. Members of this family of SINEs, designated TS, have a composite structure and...

Control of expression of Agrobacterium vir genes by synergistic actions of phenolic signal molecules and monosaccharides.

Shimoda, N, Toyoda-Yamamoto, A, Nagamine, J, Usami, S, Katayama, M, Sakagami, Y, ...

Most virulence (vir) genes of Agrobacterium tumefaciens that are required for the formation of crown gall tumors are expressed in response to such plant signal molecules as acetosyringone and lignin...

Location of the cis-acting auxin-responsive region in the promoter of the par gene from tobacco mesophyll protoplasts.

Takahashi, Y, Niwa, Y, Machida, Y, Nagata, T

We have isolated a genomic clone of an auxin-regulated par gene, which is expressed during the transition from G0 phase to S phase in the early stage of tobacco mesophyll protoplasts cultured in...

A novel cis-acting element in promoters of plant B-type cyclin genes activates M phase-specific transcription.

Ito, M, Iwase, M, Kodama, H, Lavisse, P, Komamine, A, Nishihama, R, ...

Plant B-type cyclin genes are expressed late in the G2 and M phases of the cell cycle. Previously, we showed that the promoter of a Catharanthus roseus B-type cyclin, CYM, could direct M...

Isolation of an auxin-regulated gene cDNA expressed during the transition from G0 to S phase in tobacco mesophyll protoplasts.

Takahashi, Y, Kuroda, H, Tanaka, T, Machida, Y, Takebe, I, Nagata, T

A cDNA clone for an auxin-regulated gene was isolated from a tobacco mesophyll protoplast cDNA library by differential screening. Nucleotide, sequence analysis showed that the deduced product of the...

Characterization of nascent DNA fragments produced by excision of uracil residues in DNA.

Machida, Y, Okazaki, T, Miyake, T, Ohtsuka, E, Ikehara, M

Nascent short DNA chains could result from repair of incorporated uracil residues or be intermediates in discontinuous replication. We have characterized short DNA chains having...

Operation of an efficient site-specific recombination system of Zygosaccharomyces rouxii in tobacco cells.

Onouchi, H, Yokoi, K, Machida, C, Matsuzaki, H, Oshima, Y, Matsuoka, K, ...

Recombinase encoded by the R gene of pSR1 of Zygosaccharomyces rouxii mediates reciprocal recombination between two specific recombination sites (RSs) to induce excision or inversion of the DNA...

Right-hand border regions of octopine T-DNA are recognized by RNA polymerase of Agrobacterium as well as by VirD1 and VirD2 proteins.

Niwa, Y, Yamamoto, A, Machida, C, Takebe, I, Machida, Y

The T-DNA of octopine Ti plasmid of Agrobacterium tumefaciens contains TL- and TR-DNA regions each bounded by 25 base-pair-repeats (designated A, B, C and D from left to right). Short DNA segments...

Characterization of tobacco protein kinase NPK5, a homolog of Saccharomyces cerevisiae SNF1 that constitutively activates expression of the glucose-repressible SUC2 gene for a secreted invertase of S. cerevisiae.

Muranaka, T, Banno, H, Machida, Y

We have isolated a cDNA (cNPK5) that encodes a protein kinase of 511 amino acids from suspension cultures of tobacco cells. The predicted kinase domain of NPK5 is 65% identical in terms of amino acid...

NPK1, a tobacco gene that encodes a protein with a domain homologous to yeast BCK1, STE11, and Byr2 protein kinases.

Banno, H, Hirano, K, Nakamura, T, Irie, K, Nomoto, S, Matsumoto, K, ...

We have isolated a cDNA (cNPK1) that encodes a predicted protein kinase of 690 amino acids from suspension cultures of tobacco cells. The deduced sequence is closely related to those of the protein...

Nucleotide sequence of the insertion sequence found in the T-DNA region of mutant Ti plasmid pTiA66 and distribution of its homologues in octopine Ti plasmid.

Machida, Y, Sakurai, M, Kiyokawa, S, Ubasawa, A, Suzuki, Y, Ikeda, J E

The octopine tumor-inducing (Ti) plasmid pTiA66 has an insertion mutation in its T region (the DNA region incorporated into the plant genome) that results in the slow growth of crown gall tumors....

Discontinuous replication of replicative form DNA from bacteriophage phiX174.

Machida, Y, Okazaki, T, Okazaki, R

Bacteriophage phiX174 DNA has been labeled with short pulses of [3H]thymidine during synthesis of replicative form molecules in infected Escherichia coli HF4704 cells. The replicating phiX174 DNA was...

Synthesis and biological properties of a 9,11-azo-prostanoid: highly active biochemical mimic of prostaglandin endoperoxides.

Corey, E J, Nicolaou, K C, Machida, Y, Malmsten, C L, Samuelsson, B

The 9,11-azo-prostanoid III [(5Z, 9alpha, 11alpha, 13E, 15S)-9, 11-azo-15-hydroxyprosta-5,13-dienoic acid] has been obtained by synthesis and tested for biological activity in systems which are...

Base substitutions in transposable element IS1 cause DNA duplication of variable length at the target site for plasmid co-integration.

Machida, C, Machida, Y

We demonstrate that base substitutions in the IS1 sequence affect the length of the nucleotide sequence which is duplicated during IS1-mediated co-integration. IS1K, an IS1 variant present in the...

Cutting activates a 46-kilodalton protein kinase in plants.

Usami, S, Banno, H, Ito, Y, Nishihama, R, Machida, Y

Using SDS/polyacrylamide gels that contained myelin basic protein, we identified a 46-kDa protein kinase in tobacco that is transiently activated by cutting. Although the activity of the kinase was...

Molecular characterization of a short interspersed repetitive element from tobacco that exhibits sequence homology to specific tRNAs.

Yoshioka, Y, Matsumoto, S, Kojima, S, Ohshima, K, Okada, N, Machida, Y

We have characterized a family of tRNA-derived short interspersed repetitive elements (SINEs) in the tobacco genome. Members of this family of SINEs, designated TS, have a composite structure and...

Control of expression of Agrobacterium vir genes by synergistic actions of phenolic signal molecules and monosaccharides.

Shimoda, N, Toyoda-Yamamoto, A, Nagamine, J, Usami, S, Katayama, M, Sakagami, Y, ...

Most virulence (vir) genes of Agrobacterium tumefaciens that are required for the formation of crown gall tumors are expressed in response to such plant signal molecules as acetosyringone and lignin...

Location of the cis-acting auxin-responsive region in the promoter of the par gene from tobacco mesophyll protoplasts.

Takahashi, Y, Niwa, Y, Machida, Y, Nagata, T

We have isolated a genomic clone of an auxin-regulated par gene, which is expressed during the transition from G0 phase to S phase in the early stage of tobacco mesophyll protoplasts cultured in...

A novel cis-acting element in promoters of plant B-type cyclin genes activates M phase-specific transcription.

Ito, M, Iwase, M, Kodama, H, Lavisse, P, Komamine, A, Nishihama, R, ...

Plant B-type cyclin genes are expressed late in the G2 and M phases of the cell cycle. Previously, we showed that the promoter of a Catharanthus roseus B-type cyclin, CYM, could direct M...

Isolation of an auxin-regulated gene cDNA expressed during the transition from G0 to S phase in tobacco mesophyll protoplasts.

Takahashi, Y, Kuroda, H, Tanaka, T, Machida, Y, Takebe, I, Nagata, T

A cDNA clone for an auxin-regulated gene was isolated from a tobacco mesophyll protoplast cDNA library by differential screening. Nucleotide, sequence analysis showed that the deduced product of the...

Characterization of nascent DNA fragments produced by excision of uracil residues in DNA.

Machida, Y, Okazaki, T, Miyake, T, Ohtsuka, E, Ikehara, M

Nascent short DNA chains could result from repair of incorporated uracil residues or be intermediates in discontinuous replication. We have characterized short DNA chains having...

Operation of an efficient site-specific recombination system of Zygosaccharomyces rouxii in tobacco cells.

Onouchi, H, Yokoi, K, Machida, C, Matsuzaki, H, Oshima, Y, Matsuoka, K, ...

Recombinase encoded by the R gene of pSR1 of Zygosaccharomyces rouxii mediates reciprocal recombination between two specific recombination sites (RSs) to induce excision or inversion of the DNA...

Right-hand border regions of octopine T-DNA are recognized by RNA polymerase of Agrobacterium as well as by VirD1 and VirD2 proteins.

Niwa, Y, Yamamoto, A, Machida, C, Takebe, I, Machida, Y

The T-DNA of octopine Ti plasmid of Agrobacterium tumefaciens contains TL- and TR-DNA regions each bounded by 25 base-pair-repeats (designated A, B, C and D from left to right). Short DNA segments...

Characterization of tobacco protein kinase NPK5, a homolog of Saccharomyces cerevisiae SNF1 that constitutively activates expression of the glucose-repressible SUC2 gene for a secreted invertase of S. cerevisiae.

Muranaka, T, Banno, H, Machida, Y

We have isolated a cDNA (cNPK5) that encodes a protein kinase of 511 amino acids from suspension cultures of tobacco cells. The predicted kinase domain of NPK5 is 65% identical in terms of amino acid...

NPK1, a tobacco gene that encodes a protein with a domain homologous to yeast BCK1, STE11, and Byr2 protein kinases.

Banno, H, Hirano, K, Nakamura, T, Irie, K, Nomoto, S, Matsumoto, K, ...

We have isolated a cDNA (cNPK1) that encodes a predicted protein kinase of 690 amino acids from suspension cultures of tobacco cells. The deduced sequence is closely related to those of the protein...

Nucleotide sequence of the insertion sequence found in the T-DNA region of mutant Ti plasmid pTiA66 and distribution of its homologues in octopine Ti plasmid.

Machida, Y, Sakurai, M, Kiyokawa, S, Ubasawa, A, Suzuki, Y, Ikeda, J E

The octopine tumor-inducing (Ti) plasmid pTiA66 has an insertion mutation in its T region (the DNA region incorporated into the plant genome) that results in the slow growth of crown gall tumors....

Discontinuous replication of replicative form DNA from bacteriophage phiX174.

Machida, Y, Okazaki, T, Okazaki, R

Bacteriophage phiX174 DNA has been labeled with short pulses of [3H]thymidine during synthesis of replicative form molecules in infected Escherichia coli HF4704 cells. The replicating phiX174 DNA was...

Synthesis and biological properties of a 9,11-azo-prostanoid: highly active biochemical mimic of prostaglandin endoperoxides.

Corey, E J, Nicolaou, K C, Machida, Y, Malmsten, C L, Samuelsson, B

The 9,11-azo-prostanoid III [(5Z, 9alpha, 11alpha, 13E, 15S)-9, 11-azo-15-hydroxyprosta-5,13-dienoic acid] has been obtained by synthesis and tested for biological activity in systems which are...

Base substitutions in transposable element IS1 cause DNA duplication of variable length at the target site for plasmid co-integration.

Machida, C, Machida, Y

We demonstrate that base substitutions in the IS1 sequence affect the length of the nucleotide sequence which is duplicated during IS1-mediated co-integration. IS1K, an IS1 variant present in the...