Towards richer descriptions of our collection of genomes and metagenomes (2008)
Field, D., Garrity, G, Selengut, J., Sterk, P., Tatusova, T., Thomson, N., ...
Evolution of the glutamine synthetase gene, one of the oldest existing and functioning genes.
Kumada, Y, Benson, D R, Hillemann, D, Hosted, T J, Rochefort, D A, Thompson, C J, ...
We performed molecular phylogenetic analyses of glutamine synthetase (GS) genes in order to investigate their evolutionary history. The analyses were done on 30 DNA sequences of the GS gene which...
Watanabe, M., Sumida, N., Murakami, S., Anzai, H., Thompson, C. J., Tateno, Y., ...
Penicillium decumbens is able to epoxidize cis-propenylphosphonic acid (cPA) to produce the antibiotic fosfomycin [FOM; also referred to as phosphonomycin and (−)-cis-1,2-epoxypropylphosphonic...
DNA Data Bank of Japan (DDBJ) for genome scale research in life science
Tateno, Y., Imanishi, T., Miyazaki, S., Fukami-Kobayashi, K., Saitou, N., Sugawara, H., ...
The DNA Data Bank of Japan (DDBJ, http://www.ddbj.nig.ac.jp) has made an effort to collect as much data as possible mainly from Japanese researchers. The increase rates of the data we collected,...
DNA Data Bank of Japan in the age of information biology.
DNA Data Bank of Japan (DDBJ) began its activities in 1986 in collaboration with EMBL in Europe and GenBank in the United States. DDBJ developed a data submission tool called Sakura, by which...
DNA Data Bank of Japan at work on genome sequence data.
Tateno, Y, Fukami-Kobayashi, K, Miyazaki, S, Sugawara, H, Gojobori, T
We at the DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp) have recently begun receiving, processing and releasing EST and genome sequence data submitted by various Japanese genome projects....
DNA Data Bank of Japan dealing with large-scale data submission.
Sugawara, H, Miyazaki, S, Gojobori, T, Tateno, Y
The DNA Data Bank of Japan (DDBJ) (http//:www.ddbj.nig.ac.jp) has developed a software system for mass submissions to cope with a recent expansion of EST and genome data submissions. The system is...
DNA Data Bank of Japan (DDBJ) in XML
Miyazaki, S., Sugawara, H., Gojobori, T., Tateno, Y.
The DNA Data Bank of Japan (DDBJ, http://www.ddbj.nig.ac.jp) has collected and released more entries and bases than last year. This is mainly due to large-scale submissions from Japanese sequencing...
DDBJ in the stream of various biological data
Miyazaki, S., Sugawara, H., Ikeo, K., Gojobori, T., Tateno, Y.
In the past year we at DDBJ (http://www.ddbj.nig.ac.jp) have made a steady increase in the number of data submissions with a 50.6% increment in the number of bases or 46.5% increment in the number of...
Interlocus variation of genetic distance and the neutral mutation theory.
Theoretical distributions of genetic distance between reproductively isolated taxa are derived by means of computer simulation, taking into account mutation and random genetic drift. The...
DDBJ in collaboration with mass-sequencing teams on annotation
Tateno, Y., Saitou, N., Okubo, K., Sugawara, H., Gojobori, T.
In the past year, we at DDBJ (DNA Data Bank of Japan; http://www.ddbj.nig.ac.jp) collected and released 1 066 084 entries or 718 072 425 bases including the whole chromosome 22 of chimpanzee,...
Evolution of the glutamine synthetase gene, one of the oldest existing and functioning genes.
Kumada, Y, Benson, D R, Hillemann, D, Hosted, T J, Rochefort, D A, Thompson, C J, ...
We performed molecular phylogenetic analyses of glutamine synthetase (GS) genes in order to investigate their evolutionary history. The analyses were done on 30 DNA sequences of the GS gene which...
Watanabe, M., Sumida, N., Murakami, S., Anzai, H., Thompson, C. J., Tateno, Y., ...
Penicillium decumbens is able to epoxidize cis-propenylphosphonic acid (cPA) to produce the antibiotic fosfomycin [FOM; also referred to as phosphonomycin and (−)-cis-1,2-epoxypropylphosphonic...
DNA Data Bank of Japan (DDBJ) for genome scale research in life science
Tateno, Y., Imanishi, T., Miyazaki, S., Fukami-Kobayashi, K., Saitou, N., Sugawara, H., ...
The DNA Data Bank of Japan (DDBJ, http://www.ddbj.nig.ac.jp) has made an effort to collect as much data as possible mainly from Japanese researchers. The increase rates of the data we collected,...
DNA Data Bank of Japan in the age of information biology.
DNA Data Bank of Japan (DDBJ) began its activities in 1986 in collaboration with EMBL in Europe and GenBank in the United States. DDBJ developed a data submission tool called Sakura, by which...
DNA Data Bank of Japan at work on genome sequence data.
Tateno, Y, Fukami-Kobayashi, K, Miyazaki, S, Sugawara, H, Gojobori, T
We at the DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp) have recently begun receiving, processing and releasing EST and genome sequence data submitted by various Japanese genome projects....
DNA Data Bank of Japan dealing with large-scale data submission.
Sugawara, H, Miyazaki, S, Gojobori, T, Tateno, Y
The DNA Data Bank of Japan (DDBJ) (http//:www.ddbj.nig.ac.jp) has developed a software system for mass submissions to cope with a recent expansion of EST and genome data submissions. The system is...
DNA Data Bank of Japan (DDBJ) in XML
Miyazaki, S., Sugawara, H., Gojobori, T., Tateno, Y.
The DNA Data Bank of Japan (DDBJ, http://www.ddbj.nig.ac.jp) has collected and released more entries and bases than last year. This is mainly due to large-scale submissions from Japanese sequencing...
DDBJ in the stream of various biological data
Miyazaki, S., Sugawara, H., Ikeo, K., Gojobori, T., Tateno, Y.
In the past year we at DDBJ (http://www.ddbj.nig.ac.jp) have made a steady increase in the number of data submissions with a 50.6% increment in the number of bases or 46.5% increment in the number of...
Interlocus variation of genetic distance and the neutral mutation theory.
Theoretical distributions of genetic distance between reproductively isolated taxa are derived by means of computer simulation, taking into account mutation and random genetic drift. The...
DDBJ in collaboration with mass-sequencing teams on annotation
Tateno, Y., Saitou, N., Okubo, K., Sugawara, H., Gojobori, T.
In the past year, we at DDBJ (DNA Data Bank of Japan; http://www.ddbj.nig.ac.jp) collected and released 1 066 084 entries or 718 072 425 bases including the whole chromosome 22 of chimpanzee,...
Sugawara, H., Ogasawara, O., Okubo, K., Gojobori, T., Tateno, Y.
DDBJ (http://www.ddbj.nig.ac.jp) collected and released 1 880 115 entries or 1 134 086 245 bases in the period from July 2006 to June 2007. The released data contains the high-throughput cDNAs of...
Shinotoh, H, Inoue, O, Hirayama, K, Aotsuka, A, Asahina, M, Suhara, T, ...
Striatal dopamine D1 receptors were investigated in 11 patients with Parkinson's disease (PD), five patients with striatonigral degeneration (SND) and six age-matched controls by positron emission...