Shaojie Zhang, Ilya Borovok, Yair Aharonowitz, Roded Sharan, Vineet Bafna
doi:10.1093/bioinformatics/btl232 A sequence-based filtering method for ncRNA identification
Pathogenomics: An updated European Research Agenda (2008)
Demuth, Andreas, Aharonowitz, Yair, Bachmann, Till T., Blum-Oehler, Gabriele, Buchrieser, Carmen, Covacci, Antonello, ...
Shaojie Zhang, Ilya Borovok, Yair Aharonowitz, Roded Sharan, Vineet Bafna
Recent studies have uncovered an “RNA world”, in which non coding RNA (ncRNA) sequences play a central role in the regulation of gene expression. Computational studies on ncRNA have been directed...
Zhang, Shaojie, Borovok, Ilya, Aharonowitz, Yair, Sharan, Roded, Bafna, Vineet
Motivation: Recent studies have uncovered an “RNA world”, in which non coding RNA (ncRNA) sequences play a central role in the regulation of gene expression. Computational studies on ncRNA have...
Masalha, Mahmud, Borovok, Ilya, Schreiber, Rachel, Aharonowitz, Yair, Cohen, Gerald
Staphylococcus aureus is a gram-positive facultative aerobe that can grow in the absence of oxygen by fermentation or by using an alternative electron acceptor. To investigate the mechanism by which...
Aharonowitz, Yair, Ron, Eliora Z.
A temperature-sensitive mutant of Bacillus subtilis 168 lost its viability irreversibly when grown at temperatures higher than 50 C. It is suggested that this loss of viability is due to irreversible...
Uziel, Orit, Borovok, Ilya, Schreiber, Rachel, Cohen, Gerald, Aharonowitz, Yair
In this report we describe the cloning, organization, and promoter analysis of the Staphylococcus aureus thioredoxin (trxA) and thioredoxin reductase (trxB) genes and their transcription in response...
Carbon Catabolite Regulation of Cephalosporin Production in Streptomyces clavuligerus
Aharonowitz, Yair, Demain, Arnold L.
Cephalosporin production by Streptomyces clavuligerus is regulated by some type of carbon catabolite control. Increasing concentrations of preferred carbon sources, such as glycerol and maltose,...
Role of a Cysteine Synthase in Staphylococcus aureus
Lithgow, James K., Hayhurst, Emma J., Cohen, Gerald, Aharonowitz, Yair, Foster, Simon J.
The gram-positive human pathogen Staphylococcus aureus is often isolated with media containing potassium tellurite, to which it has a higher level of resistance than Escherichia coli. The S. aureus...
Gopal, Shubha, Borovok, Ilya, Ofer, Amos, Yanku, Michaela, Cohen, Gerald, Goebel, Werner, ...
Glutathione is the predominant low-molecular-weight peptide thiol present in living organisms and plays a key role in protecting cells against oxygen toxicity. Until now, glutathione synthesis was...
Borovok, Ilya, Gorovitz, Batia, Schreiber, Rachel, Aharonowitz, Yair, Cohen, Gerald
Ribonucleotide reductases (RNRs) catalyze the conversion of ribonucleotides to deoxyribonucleotides and are essential for de novo DNA synthesis and repair. Streptomycetes contain genes coding for two...
Masalha, Mahmud, Borovok, Ilya, Schreiber, Rachel, Aharonowitz, Yair, Cohen, Gerald
Staphylococcus aureus is a gram-positive facultative aerobe that can grow in the absence of oxygen by fermentation or by using an alternative electron acceptor. To investigate the mechanism by which...
Aharonowitz, Yair, Ron, Eliora Z.
A temperature-sensitive mutant of Bacillus subtilis 168 lost its viability irreversibly when grown at temperatures higher than 50 C. It is suggested that this loss of viability is due to irreversible...
Uziel, Orit, Borovok, Ilya, Schreiber, Rachel, Cohen, Gerald, Aharonowitz, Yair
In this report we describe the cloning, organization, and promoter analysis of the Staphylococcus aureus thioredoxin (trxA) and thioredoxin reductase (trxB) genes and their transcription in response...
Carbon Catabolite Regulation of Cephalosporin Production in Streptomyces clavuligerus
Aharonowitz, Yair, Demain, Arnold L.
Cephalosporin production by Streptomyces clavuligerus is regulated by some type of carbon catabolite control. Increasing concentrations of preferred carbon sources, such as glycerol and maltose,...
Role of a Cysteine Synthase in Staphylococcus aureus
Lithgow, James K., Hayhurst, Emma J., Cohen, Gerald, Aharonowitz, Yair, Foster, Simon J.
The gram-positive human pathogen Staphylococcus aureus is often isolated with media containing potassium tellurite, to which it has a higher level of resistance than Escherichia coli. The S. aureus...
Gopal, Shubha, Borovok, Ilya, Ofer, Amos, Yanku, Michaela, Cohen, Gerald, Goebel, Werner, ...
Glutathione is the predominant low-molecular-weight peptide thiol present in living organisms and plays a key role in protecting cells against oxygen toxicity. Until now, glutathione synthesis was...
Borovok, Ilya, Gorovitz, Batia, Schreiber, Rachel, Aharonowitz, Yair, Cohen, Gerald
Ribonucleotide reductases (RNRs) catalyze the conversion of ribonucleotides to deoxyribonucleotides and are essential for de novo DNA synthesis and repair. Streptomycetes contain genes coding for two...
Grinberg, Inna, Shteinberg, Tanya, Gorovitz, Batia, Aharonowitz, Yair, Cohen, Gerald, Borovok, Ilya
Ribonucleotide reductases (RNRs) catalyze the conversion of ribonucleotides to deoxyribonucleotides and are essential for de novo DNA synthesis and repair. Streptomyces spp. contain genes coding for...
NrdR Controls Differential Expression of the Escherichia coli Ribonucleotide Reductase Genes▿ †
Torrents, Eduard, Grinberg, Inna, Gorovitz-Harris, Batia, Lundström, Hanna, Borovok, Ilya, Aharonowitz, Yair, ...
Escherichia coli possesses class Ia, class Ib, and class III ribonucleotide reductases (RNR). Under standard laboratory conditions, the aerobic class Ia nrdAB RNR genes are well expressed, whereas...
Staphylococcus aureus ArcR Controls Expression of the Arginine Deiminase Operon▿ †
Makhlin, Julia, Kofman, Tzili, Borovok, Ilya, Kohler, Christian, Engelmann, Susanne, Cohen, Gerald, ...
We identified a single open reading frame that is strongly similar to ArcR, a member of the Crp/Fnr family of bacterial transcriptional regulators, in all sequenced Staphylococcus aureus genomes. The...
Grinberg, Inna, Shteinberg, Tatyana, Hassan, A. Quamrul, Aharonowitz, Yair, Borovok, Ilya, Cohen, Gerald
Ribonucleotide reductases (RNRs) are essential enzymes in all living cells, providing the only known de novo pathway for the biosynthesis of deoxyribonucleotides (dNTPs), the immediate precursors of...