Bindewald, Eckart, Hayes, Robert, Yingling, Yaroslava G., Kasprzak, Wojciech, Shapiro, Bruce A.
We developed a database called RNAJunction that contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions....
Leonid V. Zhigilei, Yaroslava G. Yingling, Tatiana E. Itina, Tracy A. Schoolcraft, Barbara J. Garrison
The molecular dynamics (MD) simulation technique has been applied to investigate fundamental aspects of matrix-assisted laser desorption. In this paper, we focus on direct comparisons of the results...
Photochemical Processes in Laser Ablation of Organic Solids: Molecular Dynamics Study. (2002)
Ultraviolet (UV) laser ablation has been investigated because of the significance of its current and potential applications. Interaction of UV laser light with material can induce vibrational...
Photochemical processes in laser ablation of organic solids, molecular dynamics study (2002)
Thesis (Ph. D.)--Pennsylvania State University, 2002.
The full text of the dissertation is available as a Adobe Acrobat .pdf file (179 p.) ; Adobe Acrobat Reader required to view the file.
Photochemical processes in laser ablation of organic solids, molecular dynamics study (2002)
Thesis (Ph. D.)--Pennsylvania State University, 2002.
The Role Of The Photochemical Fragmentation In Laser Ablation: A Molecular Dynamics Study (2001)
Yaroslava G. Yingling, Leonid V. Zhigilei, Barbara J. Garrison
Despite numerous studies, the mechanistic understanding of the role of the photochemical processes and their coupling with the thermal processes in UV laser ablation is still far from being complete....
Bindewald, Eckart, Hayes, Robert, Yingling, Yaroslava G., Kasprzak, Wojciech, Shapiro, Bruce A.
We developed a database called RNAJunction that contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions....
Structural Domains within the 3′ Untranslated Region of Turnip Crinkle Virus▿
McCormack, John C., Yuan, Xuefeng, Yingling, Yaroslava G., Kasprzak, Wojciech, Zamora, Rodolfo E., Shapiro, Bruce A., ...
The genomes of positive-strand RNA viruses undergo conformational shifts that complicate efforts to equate structures with function. We have initiated a detailed analysis of secondary and tertiary...
Computer Simulations of Laser Ablation of Molecular Substrates
Leonid Zhigilei And, Leonid V. Zhigilei, Elodie Leveugle, Barbara J. Garrison, Yaroslava G. Yingling, Michael I. Zeifman
Contents I. Introduction 321 II. Computational Methods for Laser Ablation of Molecular Systems 323 A. Atomic-Level Simulations 324 B. Mesoscopic Breathing Sphere model 325 C. Photochemistry 326 D....
The 3′ proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits
Stupina, Vera A., Meskauskas, Arturas, McCormack, John C., Yingling, Yaroslava G., Shapiro, Bruce A., Dinman, Jonathan D., ...
During cap-dependent translation of eukaryotic mRNAs, initiation factors interact with the 5′ cap to attract ribosomes. When animal viruses translate in a cap-independent fashion, ribosomes...