Kim, HyeRan, Hurwitz, Bonnie, Yu, Yeisoo, Collura, Kristi, Gill, Navdeep, SanMiguel, Phillip, ...
Abstract We describe the establishment and analysis of a genus-wide comparative framework composed of 12 bacterial artificial chromosome fingerprint and end-sequenced physical maps representing the...
Fan, Chuanzhu, Zhang, Yong, Yu, Yeisoo, Rounsley, Steve, Long, Manyuan, Wing, Rod A.
Despite general observations of non-random genomic distribution of new genes, it is unclear whether or not new genes preferentially occur in certain genomic regions driven by related molecular...
A Phylogenetic Analysis of Indel Dynamics in the Cotton Genus (2008)
Grover, Corrinne E., Yu, Yeisoo, Wing, Rod A., Paterson, Andrew H., Wendel, Jonathan F.
Genome size evolution is a dynamic process involving counterbalancing mechanisms whose actions vary across lineages and over time. Whereas the primary mechanism of expansion, transposable element...
Zuccolo, Andrea, Sebastian, Aswathy, Talag, Jayson, Yu, Yeisoo, Kim, HyeRan, Collura, Kristi, ...
Abstract Background The genus Oryza is composed of 10 distinct genome types, 6 diploid and 4 polyploid, and includes the world's most important food crop – rice ( Oryza sativa [AA]). Genome size...
Itoh, Takeshi, Tanaka, Tsuyoshi, Barrero, Roberto A., Yamasaki, Chisato, Fujii, Yasuyuki, Hilton, Phillip B., ...
We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates...
Itoh, Takeshi, Tanaka, Tsuyoshi, Barrero, Roberto A., Yamasaki, Chisato, Fujii, Yasuyuki, Hilton, Phillip B., ...
We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates...
A global assembly of cotton ESTs (2006)
Udall, Joshua A., Swanson, Jordan M., Haller, Karl, Rapp, Ryan A., Sparks, Michael E., Hatfield, Jamie, ...
Approximately 185,000 Gossypium EST sequences comprising >94,800,000 nucleotides were amassed from 30 cDNA libraries constructed from a variety of tissues and organs under a range of conditions,...
A global assembly of cotton ESTs (2006)
Udall, Joshua A., Swanson, Jordan M., Haller, Karl, Rapp, Ryan A., Sparks, Michael E., Hatfield, Jamie, ...
Approximately 185,000 Gossypium EST sequences comprising >94,800,000 nucleotides were amassed from 30 cDNA libraries constructed from a variety of tissues and organs under a range of conditions,...
Ammiraju, Jetty S.S., Luo, Meizhong, Goicoechea, José L., Wang, Wenming, Kudrna, Dave, Mueller, Christopher, ...
Rice (Oryza sativa L.) is the most important food crop in the world and a model system for plant biology. With the completion of a finished genome sequence we must now functionally characterize the...
Ammiraju, Jetty S.S., Luo, Meizhong, Goicoechea, José L., Wang, Wenming, Kudrna, Dave, Mueller, Christopher, ...
Rice (Oryza sativa L.) is the most important food crop in the world and a model system for plant biology. With the completion of a finished genome sequence we must now functionally characterize the...
Development and application of genomics tools for analysis of grass genome / (2000)
Thesis (Ph. D.)--Clemson University, 2000.
Rice Transposable Elements: A Survey of 73,000 Sequence-Tagged-Connectors (2000)
Mao, Long, Wood, Todd C., Yu, Yeisoo, Budiman, Muhammad A., Tomkins, Jeff, Woo, Sung-sick, ...
An Integrated Physical and Genetic Map of the Rice Genome
Chen, Mingsheng, Presting, Gernot, Barbazuk, W. Brad, Goicoechea, Jose Luis, Blackmon, Barbara, Fang, Guangchen, ...
Rice was chosen as a model organism for genome sequencing because of its economic importance, small genome size, and syntenic relationship with other cereal species. We have constructed a bacterial...
Rice Transposable Elements: A Survey of 73,000 Sequence-Tagged-Connectors
Mao, Long, Wood, Todd C., Yu, Yeisoo, Budiman, Muhammad A., Tomkins, Jeff, Woo, Sung-sick, ...
As part of an international effort to sequence the rice genome, the Clemson University Genomics Institute is developing a sequence-tagged-connector (STC) framework. This framework includes the...
Sequence composition and genome organization of maize
Messing, Joachim, Bharti, Arvind K., Karlowski, Wojciech M., Gundlach, Heidrun, Kim, Hye Ran, Yu, Yeisoo, ...
Zea mays L. ssp. mays, or corn, one of the most important crops and a model for plant genetics, has a genome ≈80% the size of the human genome. To gain global insight into the organization of its...
Jantasuriyarat, Chatchawan, Gowda, Malali, Haller, Karl, Hatfield, Jamie, Lu, Guodong, Stahlberg, Eric, ...
To better understand the molecular basis of the defense response against the rice blast fungus (Magnaporthe grisea), a large-scale expressed sequence tag (EST) sequencing approach was used to...
Ammiraju, Jetty S.S., Luo, Meizhong, Goicoechea, José L., Wang, Wenming, Kudrna, Dave, Mueller, Christopher, ...
Rice (Oryza sativa L.) is the most important food crop in the world and a model system for plant biology. With the completion of a finished genome sequence we must now functionally characterize the...
A global assembly of cotton ESTs
Udall, Joshua A., Swanson, Jordan M., Haller, Karl, Rapp, Ryan A., Sparks, Michael E., Hatfield, Jamie, ...
Approximately 185,000 Gossypium EST sequences comprising >94,800,000 nucleotides were amassed from 30 cDNA libraries constructed from a variety of tissues and organs under a range of conditions,...
An Integrated Physical and Genetic Map of the Rice Genome
Chen, Mingsheng, Presting, Gernot, Barbazuk, W. Brad, Goicoechea, Jose Luis, Blackmon, Barbara, Fang, Guangchen, ...
Rice was chosen as a model organism for genome sequencing because of its economic importance, small genome size, and syntenic relationship with other cereal species. We have constructed a bacterial...
Rice Transposable Elements: A Survey of 73,000 Sequence-Tagged-Connectors
Mao, Long, Wood, Todd C., Yu, Yeisoo, Budiman, Muhammad A., Tomkins, Jeff, Woo, Sung-sick, ...
As part of an international effort to sequence the rice genome, the Clemson University Genomics Institute is developing a sequence-tagged-connector (STC) framework. This framework includes the...
Sequence composition and genome organization of maize
Messing, Joachim, Bharti, Arvind K., Karlowski, Wojciech M., Gundlach, Heidrun, Kim, Hye Ran, Yu, Yeisoo, ...
Zea mays L. ssp. mays, or corn, one of the most important crops and a model for plant genetics, has a genome ≈80% the size of the human genome. To gain global insight into the organization of its...
Jantasuriyarat, Chatchawan, Gowda, Malali, Haller, Karl, Hatfield, Jamie, Lu, Guodong, Stahlberg, Eric, ...
To better understand the molecular basis of the defense response against the rice blast fungus (Magnaporthe grisea), a large-scale expressed sequence tag (EST) sequencing approach was used to...
Ammiraju, Jetty S.S., Luo, Meizhong, Goicoechea, José L., Wang, Wenming, Kudrna, Dave, Mueller, Christopher, ...
Rice (Oryza sativa L.) is the most important food crop in the world and a model system for plant biology. With the completion of a finished genome sequence we must now functionally characterize the...
A global assembly of cotton ESTs
Udall, Joshua A., Swanson, Jordan M., Haller, Karl, Rapp, Ryan A., Sparks, Michael E., Hatfield, Jamie, ...
Approximately 185,000 Gossypium EST sequences comprising >94,800,000 nucleotides were amassed from 30 cDNA libraries constructed from a variety of tissues and organs under a range of conditions,...
Itoh, Takeshi, Tanaka, Tsuyoshi, Barrero, Roberto A., Yamasaki, Chisato, Fujii, Yasuyuki, Hilton, Phillip B., ...
We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates...
Transposable element distribution, abundance and role in genome size variation in the genus Oryza
Zuccolo, Andrea, Sebastian, Aswathy, Talag, Jayson, Yu, Yeisoo, Kim, HyeRan, Collura, Kristi, ...
Kim, HyeRan, Hurwitz, Bonnie, Yu, Yeisoo, Collura, Kristi, Gill, Navdeep, SanMiguel, Phillip, ...
Bacterial artificial chromosome (BAC) fingerprint and end-sequenced physical maps representing the ten genome types of Oryza are presented
Ammiraju, Jetty S.S., Lu, Fei, Sanyal, Abhijit, Yu, Yeisoo, Song, Xiang, Jiang, Ning, ...
Oryza (23 species; 10 genome types) contains the world's most important food crop — rice. Although the rice genome serves as an essential tool for biological research, little is known about the...
Human gut microbiota in obesity and after gastric bypass
Zhang, Husen, DiBaise, John K., Zuccolo, Andrea, Kudrna, Dave, Braidotti, Michele, Yu, Yeisoo, ...
Recent evidence suggests that the microbial community in the human intestine may play an important role in the pathogenesis of obesity. We examined 184,094 sequences of microbial 16S rRNA genes from...