Yi Zhao

Publication List Details

Period

1987 - 7400

Number

123

Co-Authors

Meiguo xin wen jie dui Zhongguo kan luan zhan zheng bao dao zhi yan jiu /--Zhao Yi zhu. (7400)

Zhao, Yi.

Expanded from author's thesis (M.A.)--University of Minnesota, 1976.

Critical parameters for the one-dimensional systems with long-range correlated disorder (2009)

Zhao, Yi, Duan, Suqing, Zhang, Wei

We study the metal-insulator transition in a tight-binding one-dimensional (1D) model with long-range correlated disorder. In the case of diagonal disorder with site energy within...

Clustered microRNAs' coordination in regulating protein-protein interaction network (2009)

Yuan, Xiongying, Liu, Changning, Yang, Pengcheng, He, Shunmin, Liao, Qi, Kang, Shuli, ...

Abstract Background MicroRNAs (miRNAs), a growing class of small RNAs with crucial regulatory roles at the post-transcriptional level, are usually found to be clustered on chromosomes. However, with...

Security Analysis of an Untrusted Source for Quantum Key Distribution: Passive Approach (2009)

Zhao, Yi, Qi, Bing, Lo, Hoi-Kwong, Qian, Li

We present a passive approach to the security analysis of quantum key distribution (QKD) with an untrusted source. A complete proof of its unconditional security is also presented. This scheme has...

The DNF Exception Problem (2008)

Dhruv Mubayi, György Turán, Yi Zhao

Abstract Given a disjunctive normal form (DNF) expression ϕ and a set A of vectors satisfying the expression, called the set of exceptions, we would like to update ϕ to get a new DNF which is false...

Proof of the (n/2 − n/2 − n/2) conjecture for large n (2008)

Yi Zhao

A conjecture of Loebl, known as the (n/2 − n/2 − n/2) Conjecture, states that if G is an n-vertex graph in which at least n/2 of the vertices have degree at least n/2, then G contains all trees...

On a two-sided Turán problem (2008)

Dhruv Mubayi, Yi Zhao

Given positive integers n, k, t, with 2 ≤ k ≤ n, and t < 2k, let m(n, k, t) be the minimum size of a family F of nonempty subsets of [n] such that every k-set in [n] contains at least t sets...

Non-Uniform Turán-Type problems (2008)

Dhruv Mubayi, Yi Zhao

Given positive integers n, k, t, with 2 ≤ k ≤ n, and t < 2k, let m(n, k, t) be the minimum size of a family F of (nonempty distinct) subsets of [n] such that every k-subset of [n] contains at...

On a two-sided Turán problem (2008)

Dhruv Mubayi, Yi Zhao

Given positive integers n, k, t, with 2 ≤ k ≤ n, and t < 2k, let m(n, k, t) be the minimum size of a family F of nonempty subsets of [n] such that every k-set in [n] contains at least t sets...

MicroRNA-encoding long non-coding RNAs (2008)

He, Shunmin, Su, Hua, Liu, Changning, Skogerbø, Geir, He, Housheng, He, Dandan, ...

Abstract Background Recent analysis of the mouse transcriptional data has revealed the existence of ~34,000 messenger-like non-coding RNAs (ml-ncRNAs). Whereas the functional properties of these...

Tiling tripartite graphs with 3-colorable graphs (2008)

Martin, Ryan, Zhao, Yi

For a fixed integer h>=1, let G be a tripartite graph with N vertices in each vertex class, N divisible by 6h, such that every vertex is adjacent to at least 2N/3+h-1 vertices in each of the other...

M: Equivalence between ’feeling the pulse’ on the human wrist and the pulse pressure wave at fingertip (2008)

Yi Zhao, Michael Small

Feeling the pulse on the wrist is the regular diagnostic method in traditional Chinese medicine. However it is natural to ask whether there is any difference between feeling the pulse on the wrist or...

The DNF Exception Problem (2008)

Dhruv Mubayi, György Turán, Yi Zhao

Abstract Given a disjunctive normal form (DNF) expression ϕ and a set A of vectors satisfying the expression, called the set of exceptions, we would like to update ϕ to get a new DNF which is false...

ACCEPTED MANUSCRIPT (2008)

Peter Keevash, Yi Zhao, Peter Keevash, Yi Zhao

This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo...

On the VC-dimension of Uniform Hypergraphs (2008)

Dhruv Mubayi, Yi Zhao

Let F be a k-uniform hypergraph on [n] where k − 1 is a power of some prime p and n ≥ n0(k). Our main result says that if |F |> � � n k−1 − logp n + k!kk, then there exists E0 ∈ F...

Non-Uniform Turán-Type problems (2008)

Dhruv Mubayi, Yi Zhao

Given positive integers n, k, t, with 2 ≤ k ≤ n, and t < 2k, let m(n, k, t) be the minimum size of a family F of (nonempty distinct) subsets of [n] such that every k-subset of [n] contains at...

OPTIMAL STBC PRECODING WITH CHANNEL COVARIANCE FEEDBACK FOR MINIMUM ERROR PROBABILITY (2008)

Yi Zhao, Raviraj Adve, Teng Joon Lim

This paper develops the optimal linear transformation (or precoding) of orthogonal space-time block codes (STBC) for minimizing probability of decoding error, when the channel covariance matrix is...

Quantum Cryptography (2008)

Lo, Hoi-Kwong, Zhao, Yi

There is no abstract for this review article.

Quantum key distribution with an unknown and untrusted source (2008)

Zhao, Yi, Qi, Bing, Lo, Hoi-Kwong

The security of a standard bi-directional "plug & play" quantum key distribution (QKD) system has been an open question for a long time. This is mainly because its source is equivalently controlled...

NONCODE v2.0: decoding the non-coding (2008)

He, Shunmin, Liu, Changning, Skogerbø, Geir, Zhao, Haitao, Wang, Jie, Liu, Tao, ...

The NONCODE database is an integrated knowledge database designed for the analysis of non-coding RNAs (ncRNAs). Since NONCODE was first released 3 years ago, the number of known ncRNAs has grown...

A Necessary And Sufficient Condition For Orthogonal Design On A Circular Arc (2007)

Yi Zhao

Introduction Fitting a circle to a set of data points is very common in engineering design, manufacturing and sciences [ Dowling, Griffin, Tsui and Zhou (1997), Moura and Kitney (1991), Berman (1983)...

On a two-sided Turán problem (2007)

Dhruv Mubayi, Yi Zhao

Given positive integers n; k; t, with 2 k n, and t 2 k, let m(n; k; t) be the minimum size of a family F of nonempty subsets of [n] such that every k-set in [n] contains at least t sets from F, and...

antiCODE: a natural sense-antisense transcripts database (2007)

Yin, Yifei, Zhao, Yi, Wang, Jie, Liu, Changning, Chen, Shuguang, Chen, Runsheng, ...

Abstract Background Natural antisense transcripts (NATs) are endogenous RNA molecules that exhibit partial or complete complementarity to other RNAs, and that may contribute to the regulation of...

Experimental demonstration of time-shift attack against practical quantum key distribution systems (2007)

Zhao, Yi, Fung, Chi-Hang Fred, Qi, Bing, Chen, Christine, Lo, Hoi-Kwong

Quantum key distribution (QKD) systems can send signals over more than 100 km standard optical fiber and are widely believed to be secure. Here, we show experimentally for the first time a...

IMP-4 and OXA {beta}-lactamases in Acinetobacter baumannii from Singapore (2007)

Koh, Tse Hsien, Sng, Li-Hwei, Wang, Grace Chee Yeng, Hsu, Li-Yang, Zhao, Yi

Objective To compare the incidence of carbapenemase genes in Acinetobacter baumannii between two time periods. Methods We studied 114 isolates of imipenem-resistant A. baumannii collected over two 5...

Antioxidant activity of Chinese ant extract preparations. (2007)

Zhao, Yi, Wang, Xiaoyan, Kawai, Motoko, Liu, Jiankang, Liu, Miao, Mori, Akitane

Chinese ant extract preparations (CAEP) are a Chinese traditional medicine which is mainly used as a health food or drink for the treatment of rheumatism, rheumatoid arthritis, chronic hepatitis,...

Codegree density of hypergraphs (2007)

Dhruv Mubayi, Yi Zhao

For an r-graph H, let C(H) = minS d(S), where the minimum is taken over all (r − 1)-sets of vertices of H, and d(S) is the number of vertices v such that S ∪ {v} is an edge of H. Given a family F...

Incorporating contrast invariance into a developmental model of orientation selectivity (2007)

Zhao, Yi

Thesis (M.Phil.)--Hong Kong University of Science and Technology, 2007

IMP-4 and OXA {beta}-lactamases in Acinetobacter baumannii from Singapore (2007)

Koh, Tse Hsien, Sng, Li-Hwei, Wang, Grace Chee Yeng, Hsu, Li-Yang, Zhao, Yi

Objective To compare the incidence of carbapenemase genes in Acinetobacter baumannii between two time periods. Methods We studied 114 isolates of imipenem-resistant A. baumannii collected over two 5...

Experimental quantum key distribution with active phase randomization (2006)

Zhao, Yi, Qi, Bing, Lo, Hoi-Kwong

Phase randomization is an important assumption made in many security proofs of practical quantum key distribution (QKD) systems. Here, we present the first experimental demonstration of QKD with...

Quantum key distribution with "dual detectors" (2006)

Qi, Bing, Zhao, Yi, Ma, Xiongfeng, Lo, Hoi-Kwong, Qian, Li

To improve the performance of a quantum key distribution (QKD) system, high speed, low dark count single photon detectors (or low noise homodyne detectors) are required. However, in practice, a fast...

Simulation and Implementation of Decoy State Quantum Key Distribution over 60km Telecom Fiber (2006)

Zhao, Yi, Qi, Bing, Ma, Xiongfeng, Lo, Hoi-Kwong, Qian, Li

Decoy state quantum key distribution (QKD) has been proposed as a novel approach to improve dramatically both the security and the performance of practical QKD set-ups. Recently, many theoretical...

Forbidding complete hypergraphs as traces (2006)

Dhruv Mubayi, Yi Zhao

Let 2 ≤ q ≤ min{p, t − 1} be fixed and n → ∞. Suppose that F is a p-uniform hypergraph on n vertices that contains no complete q-uniform hypergraph on t vertices as a trace. We determine...

Open Access (2006)

Yifei Yin, Yi Zhao, Jie Wang, Changning Liu, Shuguang Chen, Runsheng Chen, ...

© 2007 Yin et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License

NPInter: the noncoding RNAs and protein related biomacromolecules interaction database (2006)

Wu, Tao, Wang, Jie, Liu, Changning, Zhang, Yong, Shi, Baochen, Zhu, Xiaopeng, ...

The noncoding RNAs and protein related biomacromolecules interaction database (NPInter; http://bioinfo.ibp.ac.cn/NPInter or http://www.bioinfo.org.cn/NPInter) is a database that documents...

HPtaa database-potential target genes for clinical diagnosis and immunotherapy of human carcinoma (2006)

Wang, Xiaosong, Zhao, Haitao, Xu, Qingwen, Jin, Weibo, Liu, Changning, Zhang, Huagang, ...

Tumor-associated antigens (TAAs) have been the most actively employed targets in the clinical diagnosis and treatment of human carcinoma, such as PSA in the diagnosis of prostate cancer and NY-ESO-1...

Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression (2006)

Deng, Wei, Zhu, Xiaopeng, Skogerbø, Geir, Zhao, Yi, Fu, Zhuo, Wang, Yudong, ...

Recent evidence points to considerable transcription occurring in non-protein-coding regions of eukaryote genomes. However, their lack of conservation and demonstrated function have created...

Experimental Quantum Key Distribution with Decoy States (2005)

Zhao, Yi, Qi, Bing, Ma, Xiongfeng, Lo, Hoi-Kwong, Qian, Li

To increase dramatically the distance and the secure key generation rate of quantum key distribution (QKD), the idea of quantum decoys--signals of different intensities--has recently been proposed....

Studies on error control of 3-D zerotree wavelet video streaming (2005)

Zhao, Yi

With the increasing popularity of digital video communications over packet switching networks such as the Internet and wireless networks, error control techniques have become a critical research...

A Novel Pressure Indicator for Continuous Flow PCR Chip Using Micro Molded PDMS Pillar Arrays (2005)

Zhao, Yi, Zhang, Xin

DNA amplification is one of the most routine experiments carried out in biological laboratories. Continuous flow PCR chip releases biologists from their laborious exercises. The use of such chip is,...

R: Noncode: an integrated knowledge database of non-coding rnas (2005)

Changning Liu, Baoyan Bai, Geir Skogerbø, Lun Cai, Wei Deng, Yong Zhang, ...

NONCODE is an integrated knowledge database dedicated to non-coding RNAs (ncRNAs), that is to say, RNAs that function without being translated into proteins. All ncRNAs in NONCODE were filtered...

On the Traces of Complete Hypergraphs (2005)

Dhruv Mubayi, Yi Zhao

Let n ≥ t ≥ 3. Suppose that F is a family of t-element subsets of [n] satisfying � �t−1 n t−1 + o(nt−1). Our main result implies that there exists a t-element subset |F |> S of [n]...

NONCODE: an integrated knowledge database of non-coding RNAs (2005)

Liu, Changning, Bai, Baoyan, Skogerbø, Geir, Cai, Lun, Deng, Wei, Zhang, Yong, ...

NONCODE is an integrated knowledge database dedicated to non-coding RNAs (ncRNAs), that is to say, RNAs that function without being translated into proteins. All ncRNAs in NONCODE were filtered...

Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression (2005)

Deng, Wei, Zhu, Xiaopeng, Skogerbø, Geir, Zhao, Yi, Fu, Zhuo, Wang, Yudong, ...

Recent evidence points to considerable transcription occurring in non-protein-coding regions of eukaryote genomes. However, their lack of conservation and demonstrated function have created...

Multi transitions in MgB2 films prepared by pulsed laser deposition (2004)

Zhao, Yi, Chi, Yuemeng, Nie, Ruijuan, Wang, Furen

We have grown MgB2 films in a postannealing process. Precursors were prepared on Al2O3(0001) substrates by codeposition of Mg and MgB2 using pulsed laser deposition technique. Superconducting MgB2...

Date of origin of the SARS coronavirus strains (2004)

Lu, Hongchao, Zhao, Yi, Zhang, Jingfen, Wang, Yuelan, Li, Wei, Zhu, Xiaopeng, ...

Abstract Background A new respiratory infectious epidemic, severe acute respiratory syndrome (SARS), broke out and spread throughout the world. By now the putative pathogen of SARS has been...

The expansion of judicial power in China / (2004)

Zhao, Yi.

Thesis (Ph. D.)--Yale University, 2003.

Optimal STBC Precoding with Channel Covariance Feedback for Minimum Error Probability (2004)

Yi Zhao, Raviraj Adve, Teng Joon Lim

This paper develops the optimal linear transformation (or precoding) of orthogonal space-time block codes (STBC) for minimizing probability of decoding error, when the channel covariance matrix is...

Extremal theory of codegree problems (2004)

Dhruv Mubayi, Yi Zhao

For an r-graph H, let C(H) = minS d(S), where the minimum is taken over all (r − 1)-sets of vertices of H, and d(S) is the number of vertices v such that S ∪ {v} is an edge of H. Given a family F...

Optimal STBC Precoding with Channel Covariance Feedback for Minimum Error Probability (2004)

Teng Joon Lim, Raviraj Adve, Yi Zhao

This paper develops the optimal linear transformation (or precoding) of orthogonal space-time block codes (STBC) for minimizing probability of decoding error, when the channel covariance matrix is...

Optimal STBC Precoding with Channel Covariance Feedback for Minimum Error Probability (2004)

Yi Zhao, Raviraj Adve, Teng Joon Lim

This paper develops the optimal linear transformation (or precoding) of orthogonal space-time block codes (STBC) for minimizing probability of decoding error, when the channel covariance matrix is...

The interactome as a tree--an attempt to visualize the protein-protein interaction network in yeast (2004)

Lu, Hongchao, Zhu, Xiaopeng, Liu, Haifeng, Skogerbø, Geir, Zhang, Jingfen, Zhang, Yong, ...

The refinement and high-throughput of protein interaction detection methods offer us a protein–protein interaction network in yeast. The challenge coming along with the network is to find better...

On a two-sided Turán problem (2003)

Dhruv Mubayi, Yi Zhao

Given positive integers n, k, t,with2# k n,andt<2 ,letm(n,k, t)bethe minimum size of a family of nonempty subsets of [n] such that every k-set in [n] contains at least t sets from sets from ....

Topological structure analysis of the protein-protein interaction network in budding yeast (2003)

Bu, Dongbo, Zhao, Yi, Cai, Lun, Xue, Hong, Zhu, Xiaopeng, Lu, Hongchao, ...

Interaction detection methods have led to the discovery of thousands of interactions between proteins, and discerning relevance within large‐scale data sets is important to present‐day...

Authority (Ethiopia) and ORC MACRO. 2001. Ethiopia Demographic and Health Survey. Addis Ababa (2002)

Yi Zhao, Li Chen, Sujit Dey

This paper shows the need of non-deterministic testing for emerging multi-source noise in SoC interconnect buses, and proposes a cost-effective on-line detection circuit to test such noise-induced...

Proof of a Tiling Conjecture of Komlós (2002)

Ali Shokouf, Yi Zhao

ABSTRACT: A conjecture of Komlós states that for every graph H, there is a constant K such that if G is any n-vertex graph of minimum degree at least (1 � (1/ � cr(H)))n, where � cr(H) denotes...

Modeling and minimization of interconnect energy dissipation in nanometer technologies (2001)

Clark N. Taylor, Sujit Dey, Yi Zhao

As the technology sizes of semiconductor devices continue to decrease, the effect of nanometer technologies on interconnects, such as crosstalk glitches and timing variations, become more...

Modeling and minimization of interconnect energy dissipation in nanometer technologies (2001)

Clark N. Taylor, Sujit Dey, Yi Zhao

As the technology sizes of semiconductor devices continue to decrease, the effect of nanometer technologies on interconnects, such as crosstalk glitches and timing variations, become more...

Modeling and minimization of interconnect energy dissipation in nanometer technologies (2001)

Clark N. Taylor, Sujit Dey, Yi Zhao

As the technology sizes of semiconductor devices continue to decrease, the effect of nanometer technologies on interconnects, such as crosstalk glitches and timing variations, become more...

Fault-Coverage Analysis Techniques of Crosstalk (2000)

In Chip Interconnects, Yi Zhao, Student Member, Sujit Dey

This paper addresses the problem of evaluating the effectiveness of test sets to detect crosstalk defects in system-level interconnects and buses of deep submicron (DSM) chips. The fast and accurate...

Intelligent text processing (1996)

Zhao, Yi

Spell checking and syntax checking are two major tasks of text processing. Research on computer techniques for spell and syntax checking has been in progress since the 1960s, but the techniques...

A self adjusting approach to Byzantine Agreement / (1992)

Zhao, Yi.

Thesis (Ph. D.)--University of Houston, 1992.

Fastbus Slave Interface Controller on an Actel FPGA / (1991)

Zhao, Yi.

Thesis (M.S.)--State University of New York at Stony Brook, 1992.

Studies on error control of 3-D zerotree wavelet video streaming

Zhao, Yi

With the increasing popularity of digital video communications over packet switching networks such as the Internet and wireless networks, error control techniques have become a critical research...

Ribosomal subunit kinase-2 is required for growth factor-stimulated transcription of the c-Fos gene

Brüning, Jens C., Gillette, Jennifer A., Zhao, Yi, Bjorbaeck, Christian, Kotzka, Jörg, Knebel, Birgit, ...

Ribosomal subunit kinases (Rsk) have been implicated in the regulation of transcription by phosphorylating and thereby activating numerous transcription factors, such as c-Fos, cAMP responsive...

Catalytic mechanism of the phospholipase D superfamily proceeds via a covalent phosphohistidine intermediate

Gottlin, Elizabeth B., Rudolph, Amy E., Zhao, Yi, Matthews, Harry R., Dixon, Jack E.

The phospholipase D (PLD) superfamily includes enzymes of phospholipid metabolism, nucleases, as well as ORFs of unknown function in viruses and pathogenic bacteria. These enzymes are characterized...

Identification of the block in targeted retroviral-mediated gene transfer

Zhao, Yi, Zhu, Lunjian, Lee, Sunyoung, Li, Ling, Chang, Eric, Soong, Nay-Wei, ...

A chimeric retroviral vector (33E67) containing a CD33-specific single-chain antibody was generated in an attempt to target cells displaying the CD33 surface antigen. The chimeric envelope protein...

Altered Extracellular Signal-Regulated Kinase Signaling and Glycogen Metabolism in Skeletal Muscle from p90 Ribosomal S6 Kinase 2 Knockout Mice

Dufresne, Scott D., Bjørbæk, Christian, El-Haschimi, Karim, Zhao, Yi, Aschenbach, William G., Moller, David E., ...

The p90 ribosomal S6 kinase (RSK), a cytosolic substrate for the extracellular signal-regulated kinase (ERK), is involved in transcriptional regulation, and one isoform (RSK2) has been implicated in...

Functional Domains in the Retroviral Transmembrane Protein

Zhao, Yi, Zhu, Lunjian, Benedict, Chris A., Chen, Dagang, Anderson, W. French, Cannon, Paula M.

The envelope glycoproteins of the mammalian type C retroviruses consist of two subunits, a surface (SU) protein and a transmembrane (TM) protein. SU binds to the viral receptor and is thought to...

Role of Variable Regions A and B in Receptor Binding Domain of Amphotropic Murine Leukemia Virus Envelope Protein

Han, Jin-Young, Zhao, Yi, Anderson, W. French, Cannon, Paula M.

For the amphotropic murine leukemia virus (MuLV), a 208-amino-acid amino-terminal fragment of the surface unit (SU) of the envelope glycoprotein is sufficient to bind to its receptor, Pit2. Within...

Receptor-Mediated Moloney Murine Leukemia Virus Entry Can Occur Independently of the Clathrin-Coated-Pit-Mediated Endocytic Pathway

Lee, Sunyoung, Zhao, Yi, Anderson, W. French

To investigate receptor-mediated Moloney murine leukemia virus (MoMuLV) entry, the green fluorescent protein (GFP)-tagged ecotropic receptor designated murine cationic amino acid transporter (MCAT-1)...

Topological structure analysis of the protein–protein interaction network in budding yeast

Bu, Dongbo, Zhao, Yi, Cai, Lun, Xue, Hong, Zhu, Xiaopeng, Lu, Hongchao, ...

Interaction detection methods have led to the discovery of thousands of interactions between proteins, and discerning relevance within large-scale data sets is important to present-day biology. Here,...

The interactome as a tree—an attempt to visualize the protein–protein interaction network in yeast

Lu, Hongchao, Zhu, Xiaopeng, Liu, Haifeng, Skogerbø, Geir, Zhang, Jingfen, Zhang, Yong, ...

The refinement and high-throughput of protein interaction detection methods offer us a protein–protein interaction network in yeast. The challenge coming along with the network is to find better...

NONCODE: an integrated knowledge database of non-coding RNAs

Liu, Changning, Bai, Baoyan, Skogerbø, Geir, Cai, Lun, Deng, Wei, Zhang, Yong, ...

NONCODE is an integrated knowledge database dedicated to non-coding RNAs (ncRNAs), that is to say, RNAs that function without being translated into proteins. All ncRNAs in NONCODE were filtered...

NPInter: the noncoding RNAs and protein related biomacromolecules interaction database

Wu, Tao, Wang, Jie, Liu, Changning, Zhang, Yong, Shi, Baochen, Zhu, Xiaopeng, ...

The noncoding RNAs and protein related biomacromolecules interaction database (NPInter; or ) is a database that documents experimentally determined functional interactions between noncoding RNAs...

HPtaa database-potential target genes for clinical diagnosis and immunotherapy of human carcinoma

Wang, Xiaosong, Zhao, Haitao, Xu, Qingwen, Jin, Weibo, Liu, Changning, Zhang, Huagang, ...

Tumor-associated antigens (TAAs) have been the most actively employed targets in the clinical diagnosis and treatment of human carcinoma, such as PSA in the diagnosis of prostate cancer and NY-ESO-1...

Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression

Deng, Wei, Zhu, Xiaopeng, Skogerbø, Geir, Zhao, Yi, Fu, Zhuo, Wang, Yudong, ...

Recent evidence points to considerable transcription occurring in non-protein-coding regions of eukaryote genomes. However, their lack of conservation and demonstrated function have created...

Ribosomal subunit kinase-2 is required for growth factor-stimulated transcription of the c-Fos gene

Brüning, Jens C., Gillette, Jennifer A., Zhao, Yi, Bjorbaeck, Christian, Kotzka, Jörg, Knebel, Birgit, ...

Ribosomal subunit kinases (Rsk) have been implicated in the regulation of transcription by phosphorylating and thereby activating numerous transcription factors, such as c-Fos, cAMP responsive...

Catalytic mechanism of the phospholipase D superfamily proceeds via a covalent phosphohistidine intermediate

Gottlin, Elizabeth B., Rudolph, Amy E., Zhao, Yi, Matthews, Harry R., Dixon, Jack E.

The phospholipase D (PLD) superfamily includes enzymes of phospholipid metabolism, nucleases, as well as ORFs of unknown function in viruses and pathogenic bacteria. These enzymes are characterized...

Identification of the block in targeted retroviral-mediated gene transfer

Zhao, Yi, Zhu, Lunjian, Lee, Sunyoung, Li, Ling, Chang, Eric, Soong, Nay-Wei, ...

A chimeric retroviral vector (33E67) containing a CD33-specific single-chain antibody was generated in an attempt to target cells displaying the CD33 surface antigen. The chimeric envelope protein...

Altered Extracellular Signal-Regulated Kinase Signaling and Glycogen Metabolism in Skeletal Muscle from p90 Ribosomal S6 Kinase 2 Knockout Mice

Dufresne, Scott D., Bjørbæk, Christian, El-Haschimi, Karim, Zhao, Yi, Aschenbach, William G., Moller, David E., ...

The p90 ribosomal S6 kinase (RSK), a cytosolic substrate for the extracellular signal-regulated kinase (ERK), is involved in transcriptional regulation, and one isoform (RSK2) has been implicated in...

Functional Domains in the Retroviral Transmembrane Protein

Zhao, Yi, Zhu, Lunjian, Benedict, Chris A., Chen, Dagang, Anderson, W. French, Cannon, Paula M.

The envelope glycoproteins of the mammalian type C retroviruses consist of two subunits, a surface (SU) protein and a transmembrane (TM) protein. SU binds to the viral receptor and is thought to...

Role of Variable Regions A and B in Receptor Binding Domain of Amphotropic Murine Leukemia Virus Envelope Protein

Han, Jin-Young, Zhao, Yi, Anderson, W. French, Cannon, Paula M.

For the amphotropic murine leukemia virus (MuLV), a 208-amino-acid amino-terminal fragment of the surface unit (SU) of the envelope glycoprotein is sufficient to bind to its receptor, Pit2. Within...

Receptor-Mediated Moloney Murine Leukemia Virus Entry Can Occur Independently of the Clathrin-Coated-Pit-Mediated Endocytic Pathway

Lee, Sunyoung, Zhao, Yi, Anderson, W. French

To investigate receptor-mediated Moloney murine leukemia virus (MoMuLV) entry, the green fluorescent protein (GFP)-tagged ecotropic receptor designated murine cationic amino acid transporter (MCAT-1)...

Topological structure analysis of the protein–protein interaction network in budding yeast

Bu, Dongbo, Zhao, Yi, Cai, Lun, Xue, Hong, Zhu, Xiaopeng, Lu, Hongchao, ...

Interaction detection methods have led to the discovery of thousands of interactions between proteins, and discerning relevance within large-scale data sets is important to present-day biology. Here,...

The interactome as a tree—an attempt to visualize the protein–protein interaction network in yeast

Lu, Hongchao, Zhu, Xiaopeng, Liu, Haifeng, Skogerbø, Geir, Zhang, Jingfen, Zhang, Yong, ...

The refinement and high-throughput of protein interaction detection methods offer us a protein–protein interaction network in yeast. The challenge coming along with the network is to find better...

NONCODE: an integrated knowledge database of non-coding RNAs

Liu, Changning, Bai, Baoyan, Skogerbø, Geir, Cai, Lun, Deng, Wei, Zhang, Yong, ...

NONCODE is an integrated knowledge database dedicated to non-coding RNAs (ncRNAs), that is to say, RNAs that function without being translated into proteins. All ncRNAs in NONCODE were filtered...

Gene expression profile of murine long-term reconstituting vs. short-term reconstituting hematopoietic stem cells

Zhong, Jiang F., Zhao, Yi, Sutton, Susan, Su, Andrew, Zhan, Yuxia, Zhu, Lunjian, ...

The hematopoietic stem cell (HSC) compartment is composed of long-term reconstituting (LTR) and short-term reconstituting (STR) stem cells. LTR HSC can reconstitute the hematopoietic system for life,...

NPInter: the noncoding RNAs and protein related biomacromolecules interaction database

Wu, Tao, Wang, Jie, Liu, Changning, Zhang, Yong, Shi, Baochen, Zhu, Xiaopeng, ...

The noncoding RNAs and protein related biomacromolecules interaction database (NPInter; or ) is a database that documents experimentally determined functional interactions between noncoding RNAs...

HPtaa database-potential target genes for clinical diagnosis and immunotherapy of human carcinoma

Wang, Xiaosong, Zhao, Haitao, Xu, Qingwen, Jin, Weibo, Liu, Changning, Zhang, Huagang, ...

Tumor-associated antigens (TAAs) have been the most actively employed targets in the clinical diagnosis and treatment of human carcinoma, such as PSA in the diagnosis of prostate cancer and NY-ESO-1...

Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression

Deng, Wei, Zhu, Xiaopeng, Skogerbø, Geir, Zhao, Yi, Fu, Zhuo, Wang, Yudong, ...

Recent evidence points to considerable transcription occurring in non-protein-coding regions of eukaryote genomes. However, their lack of conservation and demonstrated function have created...

NONCODE v2.0: decoding the non-coding

He, Shunmin, Liu, Changning, Skogerbø, Geir, Zhao, Haitao, Wang, Jie, Liu, Tao, ...

The NONCODE database is an integrated knowledge database designed for the analysis of non-coding RNAs (ncRNAs). Since NONCODE was first released 3 years ago, the number of known ncRNAs has grown...

Limit distributions of multivariate kurtosis and moments under Watson rotational symmetric distributions

Zhao, Yi, Konishi, Sadanori

The limit distribution of Mardia's measure of sample multivariate kurtosis is derived for a wide class of multivariate distributions which includes both the family of elliptical and Watson rotational...

Covariance matrices of quadratic forms in elliptical distributions

Zhao, Yi

The covariance matrix of a generalized quadratic form is obtained under the assumption of an elliptical distribution. As special cases of the result, the variances and covariances of a sample...