Yongmei Ji

BIOINFORMATICS ORIGINAL PAPER doi:10.1093/bioinformatics/btm272 Sequence analysis RNA Sampler: a new sampling based algorithm for common RNA (2008)

Structural Alignment, Xing Xu, Yongmei Ji, Gary D. Stormo

Motivation: Non-coding RNA genes and RNA structural regulatory motifs play important roles in gene regulation and other cellular functions. They are often characterized by specific secondary...

RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment (2007)

Xu, Xing, Ji, Yongmei, Stormo, Gary D.

Motivation: Non-coding RNA genes and RNA structural regulatory motifs play important roles in gene regulation and other cellular functions. They are often characterized by specific secondary...

Computational comparative RNA secondary structure analyses in bacteria / (2004)

Ji, Yongmei.

Thesis (Ph. D.)--Washington University, 2004. Program in Molecular Genetics

A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences (2004)

Ji, Yongmei, Xu, Xing, Stormo, Gary D.

Motivation: RNA structure motifs contained in mRNAs have been found to play important roles in regulating gene expression. However, identification of novel RNA regulatory motifs using computational...

A graph theoretical approach to predict common RNA secondary structure motifs including pseudoknots in unaligned sequences (2004)

Ji, Yongmei, Xu, Xing, Stormo, Gary D.

Motivation: RNA structure motifs contained in mRNAs have been discovered to play important roles in regulating gene expression. However, identification of novel RNA regulatory motifs using...

A graph theoretical approach to predict common RNA secondary structure motifs including pseudoknots in unaligned sequences (2004)

Ji, Yongmei, Xu, Xing, Stormo, Gary D.

Motivation: RNA structure motifs contained in mRNAs have been discovered to play important roles in regulating gene expression. However, identification of novel RNA regulatory motifs using...

Do mRNAs act as direct sensors of small molecules to control their expression?

Stormo, Gary D., Ji, Yongmei

Do mRNAs act as direct sensors of small molecules to control their expression?

Stormo, Gary D., Ji, Yongmei

Discovering cis-Regulatory RNAs in Shewanella Genomes by Support Vector Machines

Xu, Xing, Ji, Yongmei, Stormo, Gary D.

An increasing number of cis-regulatory RNA elements have been found to regulate gene expression post-transcriptionally in various biological processes in bacterial systems. Effective computational...