Bos taurusgenome assembly (2009)
Liu, Yue, Qin, Xiang, Song, Xing-Zhi, Jiang, Huaiyang, Shen, Yufeng, Durbin, K James, ...
Abstract Background We present here the assembly of the bovine genome. The assembly method combines the BAC plus WGS local assembly used for the rat and sea urchin with the whole genome shotgun (WGS)...
Wang, Xiaohu, Gao, Haichun, Shen, Yufeng, Weinstock, George M., Zhou, Jizhong, Palzkill, Timothy
Quantifying the binding energy in DNA–protein interactions is of critical importance to understand transcriptional regulation. Based on a simple computational model, this study describes a...
Development of novel BAC-based strategy for whole genome sequencing projects / (2006)
Thesis (Ph.D.)--Baylor College of Medicine. Graduate Program in Structural and Computational Biology and Molecular Biophysics, 2006.
Packed capillary column chromatography using compressible mobile phases / (1998)
Thesis (Ph.D.) -- Brigham Young University. Dept. of Chemistry and Biochemistry, 1998.
Intrinsic flexibility and gating mechanism of the potassium channel KcsA
Shen, Yufeng, Kong, Yifei, Ma, Jianpeng
The gating mechanism of the potassium channel KcsA was studied by normal mode analysis. The results provided an atomic description of the locations of the pivot points and the motional features of...
Lee, Sang-Won, Berger, Scott J., Martinović, Suzana, Paša-Tolić, Ljiljana, Anderson, Gordon A., Shen, Yufeng, ...
Electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry coupled with capillary reverse-phase liquid chromatography was used to characterize intact proteins from the large...
Conformational pathways in the gating of Escherichia coli mechanosensitive channel
Kong, Yifei, Shen, Yufeng, Warth, Tiffany E., Ma, Jianpeng
The pathway of the gating conformational transition of Escherichia coli mechanosensitive channel was simulated, using the recently modeled open and closed structures, by targeted molecular dynamics...
Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags
Lipton, Mary S., Paša-Tolić, Ljiljana, Anderson, Gordon A., Anderson, David J., Auberry, Deanna L., Battista, John R., ...
Understanding biological systems and the roles of their constituents is facilitated by the ability to make quantitative, sensitive, and comprehensive measurements of how their proteome changes, e.g.,...
Intrinsic flexibility and gating mechanism of the potassium channel KcsA
Shen, Yufeng, Kong, Yifei, Ma, Jianpeng
The gating mechanism of the potassium channel KcsA was studied by normal mode analysis. The results provided an atomic description of the locations of the pivot points and the motional features of...
Lee, Sang-Won, Berger, Scott J., Martinović, Suzana, Paša-Tolić, Ljiljana, Anderson, Gordon A., Shen, Yufeng, ...
Electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry coupled with capillary reverse-phase liquid chromatography was used to characterize intact proteins from the large...
Conformational pathways in the gating of Escherichia coli mechanosensitive channel
Kong, Yifei, Shen, Yufeng, Warth, Tiffany E., Ma, Jianpeng
The pathway of the gating conformational transition of Escherichia coli mechanosensitive channel was simulated, using the recently modeled open and closed structures, by targeted molecular dynamics...
Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags
Lipton, Mary S., Paša-Tolić, Ljiljana, Anderson, Gordon A., Anderson, David J., Auberry, Deanna L., Battista, John R., ...
Understanding biological systems and the roles of their constituents is facilitated by the ability to make quantitative, sensitive, and comprehensive measurements of how their proteome changes, e.g.,...
Wang, Xiaohu, Gao, Haichun, Shen, Yufeng, Weinstock, George M., Zhou, Jizhong, Palzkill, Timothy
Quantifying the binding energy in DNA–protein interactions is of critical importance to understand transcriptional regulation. Based on a simple computational model, this study describes a...