Structural Analysis of Holo-Neocarcinostatin by Two-Dimensional NMR Method, (9999)
Takashima, Hiroyuki, Amiya, Shigetoshi, Kobayashi, Yuji
This article is from 'Peptides. Chemistry and Biology: Proceedings of the American Peptide Symposium (12th) Held in Cambridge, Massachusetts on 16-21 June 1991', AD-A256 113, p313-314.
Shimomura, Yoshimitsu, Kamikubo, Hironari, Nishi, Yoshinori, Masako, Takuya, Kataoka, Mikio, Kobayashi, Yuji, ...
IscU plays a key role during iron–sulphur (Fe–S) cluster biosynthesis as a scaffold for the assembly of a nascent, highly labile Fe–S cluster. Here we report the characterization of an...
Measurement of circular dichroism and structural chemical research of d(CG)6 and d(TA)6 (2006)
Tozuka, Yoshitaka, Yoshikawa, Yuki, Ohishi, Hirofumi, Kobayashi, Yuji, Da-Yang, Zhou, Nakatani, Kazuhiko
It was known that d(CG)6 became left-handed Z-DNA by a theoretical calculation. We carried out a CD measurement of d(CG)6 at room temperature. B-Z transition was occurred when I raised the...
Takinowaki, Hiroto, Matsuda, Yasuhiro, Yoshida, Takuya, Kobayashi, Yuji, Ohkubo, Tadayasu
The N-terminal 16-kDa domain of Escherichia coli Ada protein (N-Ada16k) repairs DNA methyl phosphotriester lesions by an irreversible methyl transfer to its cysteine residue. Upon the methylation,...
Takinowaki, Hiroto, Matsuda, Yasuhiro, Yoshida, Takuya, Kobayashi, Yuji, Ohkubo, Tadayasu
The N-terminal 16-kDa domain of Escherichia coli Ada protein (N-Ada16k) repairs DNA methyl phosphotriester lesions by an irreversible methyl transfer to its cysteine residue. Upon the methylation,...
Takinowaki, Hiroto, Matsuda, Yasuhiro, Yoshida, Takuya, Kobayashi, Yuji, Ohkubo, Tadayasu
The N-terminal 16-kDa domain of Escherichia coli Ada protein (N-Ada16k) repairs DNA methyl phosphotriester lesions by an irreversible methyl transfer to its cysteine residue. Upon the methylation,...
Gröbner bases of associative algebras and the Hochschild cohomology (2004)
Abstract. We give an algorithmic way to construct a free bimodule resolution of an algebra admitting a Gröbner base. It enables us to compute the Hochschild (co)homology of the algebra. Let A be a...
Kaas, Quentin, Aumelas, André, Kubo, Shigeru, Chino, Naoyoshi, Kobayashi, Yuji, Chiche, Laurent
The [des(17−21)]-endothelin-1 (CSH-ET) and [Lys-2-Arg-1-des(17−21)]-endothelin-1 (KR-CSH-ET) peptides, designed by removing the five-residue hydrophobic tail from the endothelin-1 (ET-1) and...
Kaas, Quentin, Aumelas, André, Kubo, Shigeru, Chino, Naoyoshi, Kobayashi, Yuji, Chiche, Laurent
The [des(17−21)]-endothelin-1 (CSH-ET) and [Lys-2-Arg-1-des(17−21)]-endothelin-1 (KR-CSH-ET) peptides, designed by removing the five-residue hydrophobic tail from the endothelin-1 (ET-1) and...
Shimizu, Tomomi, Nakagaki, Masao, Nishi, Yoshinori, Kobayashi, Yuji, Hachimori, Akira, Uchiumi, Toshio
Acidic ribosomal phosphoproteins P0, P1 and P2 were isolated in soluble form from silkworm ribosomes and tested for their interactions with each other and with RNA fragments corresponding to the...
A recursive algorithm for the linear complementarity problem (2001)
Abstract. We have proposed an O(n 3) recursive algorithm for the linear complementarity problem LCP(A, q), where A is an M-matrix. In this paper, a block form of the algorithm is presented. Many...
On Homotopical and Homological Finiteness Conditions for Finitely Presented Monoids (2000)
Yuji Kobayashi, Friedrich Otto
An example of a finitely presented monoid is given that does not satisfy the homotopical finiteness condition FHT, although it satisfies both the homological finiteness conditions left FP1 and right...
Some Exact Sequences for the Homotopy (bi-)module of a Monoid (2000)
Yuji Kobayashi, Friedrich Otto
For finitely presented monoids the homological finiteness conditions left-FP 3 , left- FP 4 , right-FP 3 and right-FP 4 , the homotopical finiteness conditions of having finite derivation type FDT...
Some Identities Related to Automata, Determinants, and Möbius Functions (1997)
Diekert, Volker, Kobayashi, Yuji
23 pages
Repetitiveness Of Languages Generated By Morphisms (1997)
Yuji Kobayashi, Friedrich Otto
We study the repetition of subwords in languages generated by morphisms. First we give a simple proof for the fact that such a language is repetitive if and only if it is strongly repetitive...
Infinite Convergent String-Rewriting Systems and Cross-Sections for Monoids (1996)
Masashi Katsura, Yuji Kobayashi, Friedrich Otto
A finitely presented monoid has a decidable word problem if and only if it can be presented by some left-recursive convergent string-rewriting system if and only if it has a recursive cross-section....
The Improved Bounce Solution of SU(2)-Higgs Model (1993)
We further develop the reduced action formalism of the SU(2)-Higgs model originally given by Aoyama et.al.. Our new ansatz for the sphaleron solution makes it possible to apply this formalism to all...
Sato, Akihiro, Nishimura, Shigenori, Ohkubo, Tadayasu, Kyogoku, Yoshimasa, Koyama, Satoshi, Kobayashi, Masakazu, ...
Human insulin-like growth factor-I (IGF-I) was studied by two-dimensional 1H-NMR spectroscopy. Resonance assignments were obtained for all the backbone protons and almost all of the sidechain protons...
Tamaoki, Haruhiko, Kobayashi, Yuji, Nishimura, Shigenori, Ohkubo, Tadayasu, Kyogoku, Yoshimasa, Nakajima, Kiichiro, ...
The structure of endothelin-1 (ET-1), an endothelial cell-derived peptide with vasoconstricting activity, was determined in an aqueous solution by means of a combination of NMR and distance geometry...
Takashima, Hiroyuki, Amiya, Shigetoshi, Kobayashi, Yuji
Conformational analysis of neocarzinostatin, an antibiotic protein with antitumor activity, in its holo-state in solution was carried out by NMR-spectroscopy. The results showed a β-barrel structure...
Yoshlda, Mayumi, Nakai, Takahisa, Fukuhara, Kenichi, Saitoh, Shin, Yoshikawa, Wataru, Kobayashi, Yuji, ...
The three-dimensional structure of an α-amylase inhibitor, HAIM, composed of 78 amino acids, was analyzed by two-dimensional NMR techniques. Sequence-specific assignments were made for the amino...
Koyama, Satoshi, Kobayashi, Yuji, Ohkubo, Tadayasu, Kyogoku, Yoshimasa, Sato, Akihiro, Kobayashi, Masakazu, ...
The differences in conformation between α-human atrial natriuretic polypeptide (α-hANP) and its inactive analog, Met(O)-α-hANP, have been analyzed by nuclear magnetic resonance spectroscopy. All...
Shigeta, Seiko, Ono, Kazuhisa, Ohta, Masaya, Kobayashi, Yuji, Oka, Satoru
Using the methods of methylation/GLC, MS, and 1H-NMR analyses, a disaccharide structure of GalNAcα1↑>2Fucl↑ was identified as one of the major structural units at non-reducing terminals of a...
The Conformation of {alpha}-Human Atrial Natriuretic Polypeptide in Solution (1988)
Kobayashi, Yuji, Ohkubo, Tadayasu, Kyogoku, Yoshimasa, Koyama, Satoshi, Kobayashi, Masakazu, Go, Nobuhiro
The three-dimensional structure of α-human ANP in solution was determined through the combined use of nuclear magnetic resonance spectroscopy and distance geometry. The results are based on distance...
KIMURA, Yoshinobu, HASE, Sumihiro, KOBAYASHI, Yuji, KYOGOKU, Yoshimasa, FUNATSU, Gunki, IKENAKA, Tokuji
The structures of sugar chains from two lectins in seeds of the castor bean (Ricinus communis) were identified. The sugar chains were liberated from the lectins by hydrazinolysis. After...
HASE, Sumihiro, KOYAMA, Satoshi, DAIYASU, Hiromi, TAKEMOTO, Hiroshi, HARA, Saburo, KOBAYASHI, Yuji, ...
An asparagine-linked sugar chain of a protease inhibitor from barbados pride (Caesalpinia pulcherrima Sw.) was liberated by hydrazinolysis. After iV-acetylation, the reducing end residue of this...
Uesugi, Seiichi, Ohkubo, Mitsuru, Ohtsuka, Eiko, Ikehara, Morio, Kobayashi, Yuji, Kyogoku, Yoshimasa
The poly [r(C-G)]duplex shows an unusually large negative CD band in the long wavelength region. in order to elucidate this phenomenon, r(C-G-C-G) and r(C-G-C-G-C-G) were synthesized by a...
Uesugi, Seiichi, Shida, Toshio, Ikehara, Morio, Kobayashi, Yuji, Kyogoku, Yoshimasa
To elucidate the mechanism of DNA strand scission by bleomycin, a d(C-G C-G-C-G) duplex was treated with the bleomycin-iron ion complex in the presence of H2 O2 and degradation products (1, 2,...
IWAHASHI, Hideo, AKUTSU, Hideo, KOBAYASHI, Yuji, KYOGOKU, Yoshimasa, ONO, Takeo, KOGA, Hideo, ...
The λ tof repressor protein was purified from E. coli cells retaining λdv plasmids by applying DNA-cellulose chromatography. 3H-labeled λdv and λimm21dv DNA, carrying and lacking λ operators,...
Sedimentation Analysis of Soluble Collagen and Its Subunits of Chicken Leg Tendon (1971)
KAKIUCHI, Kinji, KOBAYASHI, Yuji
The description of some physico-chemical properties of soluble collagen extracted from chicken leg tendons in solution have been provided. The sedimentation equilibrium experiments were carried out....
Shimizu, Tomomi, Nakagaki, Masao, Nishi, Yoshinori, Kobayashi, Yuji, Hachimori, Akira, Uchiumi, Toshio
Acidic ribosomal phosphoproteins P0, P1 and P2 were isolated in soluble form from silkworm ribosomes and tested for their interactions with each other and with RNA fragments corresponding to the...
Effect of Intracellular pH on Rotational Speed of Bacterial Flagellar Motors†
Minamino, Tohru, Imae, Yasuo, Oosawa, Fumio, Kobayashi, Yuji, Oosawa, Kenji
Weak acids such as acetate and benzoate, which partially collapse the transmembrane proton gradient, not only mediate pH taxis but also impair the motility of Escherichia coli and Salmonella at an...
Wilson, Daniel N, Schluenzen, Frank, Harms, Joerg M, Yoshida, Takuya, Ohkubo, Tadayasu, Albrecht, Renate, ...
This study presents the crystal structure of domain I of the Escherichia coli ribosome recycling factor (RRF) bound to the Deinococcus radiodurans 50S subunit. The orientation of RRF is consistent...
Shimizu, Tomomi, Nakagaki, Masao, Nishi, Yoshinori, Kobayashi, Yuji, Hachimori, Akira, Uchiumi, Toshio
Acidic ribosomal phosphoproteins P0, P1 and P2 were isolated in soluble form from silkworm ribosomes and tested for their interactions with each other and with RNA fragments corresponding to the...
Effect of Intracellular pH on Rotational Speed of Bacterial Flagellar Motors†
Minamino, Tohru, Imae, Yasuo, Oosawa, Fumio, Kobayashi, Yuji, Oosawa, Kenji
Weak acids such as acetate and benzoate, which partially collapse the transmembrane proton gradient, not only mediate pH taxis but also impair the motility of Escherichia coli and Salmonella at an...
Wilson, Daniel N, Schluenzen, Frank, Harms, Joerg M, Yoshida, Takuya, Ohkubo, Tadayasu, Albrecht, Renate, ...
This study presents the crystal structure of domain I of the Escherichia coli ribosome recycling factor (RRF) bound to the Deinococcus radiodurans 50S subunit. The orientation of RRF is consistent...
Lin, Linyen, Nakano, Hiroaki, Uchiyama, Susumu, Fujimoto, Satoru, Matsunaga, Sachihiro, Nakamura, Shota, ...
A plant- and prokaryote-conserved domain (PPC) has been crystallized. The crystal diffracted to 1.7 Å resolution and belonged to space group P6322.
Ichiki, Shin-ichi, Nakamura, Shota, Ohkubo, Tadayasu, Kobayashi, Yuji, Hasegawa, Jun, Uchiyama, Susumu, ...
Cytochrome c 552 of a moderate thermophile, H. thermoluteolus, was overexpressed in E. coli and crystallized for X-ray diffraction study.
Takinowaki, Hiroto, Matsuda, Yasuhiro, Yoshida, Takuya, Kobayashi, Yuji, Ohkubo, Tadayasu
The N-terminal 16-kDa domain of Escherichia coli Ada protein (N-Ada16k) repairs DNA methyl phosphotriester lesions by an irreversible methyl transfer to its cysteine residue. Upon the methylation,...
Kataoka, Sachiyo, Nakamura, Shota, Ohkubo, Tadayasu, Ueda, Shigeru, Uchiyama, Susumu, Kobayashi, Yuji, ...
The complex of NADH and 3α-HSD from Pseudomonas sp. B-0831 has been crystallized and X-ray diffraction data have been collected to 1.8 Å resolution.
Crystallization of human nicotinamide phosphoribosyltransferase
Takahashi, Ryo, Nakamura, Shota, Yoshida, Takuya, Kobayashi, Yuji, Ohkubo, Tadayasu
Human nicotinamide phosphoribosyltransferase has been crystallized using microseeding methods and X-ray diffraction data have been collected at 2.0 Å resolution.
Nishimura, Mitsuhiro, Kaminishi, Tatsuya, Kawazoe, Masahito, Shirouzu, Mikako, Takemoto, Chie, Yokoyama, Shigeyuki, ...
A truncated variant of human ribosomal protien L10 was prepared and crystallized. Diffraction data were collected to 2.5 Å resolution.