Shuichi Hirose, Kana Shimizu, Satoru Kanai, Yutaka Kuroda, Tamotsu Noguchi
Motivation: Recent experimental and theoretical studies have revealed several proteins containing sequence segments that are unfolded under physiological conditions. These segments are called...
POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions (2007)
Hirose, Shuichi, Shimizu, Kana, Kanai, Satoru, Kuroda, Yutaka, Noguchi, Tamotsu
Motivation: Recent experimental and theoretical studies have revealed several proteins containing sequence segments that are unfolded under physiological conditions. These segments are called...
Miyazaki, Satoshi, Kuroda, Yutaka, Yokoyama, Shigeyuki
Background The reliable dissection of large proteins into structural domains represents an important issue for structural genomics/proteomics projects. To provide a practical approach to this issue,...
Computer-aided NMR assay for detecting natively folded structural domains (2006)
Hondoh, Takayuki, Kato, Atsushi, Yokoyama, Shigeyuki, Kuroda, Yutaka
Structural genomics projects require strategies for rapidly recognizing protein sequences appropriate for routine structure determination. For large proteins, this strategy includes the dissection of...
Computer-aided NMR assay for detecting natively folded structural domains (2006)
Hondoh, Takayuki, Kato, Atsushi, Yokoyama, Shigeyuki, Kuroda, Yutaka
Structural genomics projects require strategies for rapidly recognizing protein sequences appropriate for routine structure determination. For large proteins, this strategy includes the dissection of...
Computer-aided NMR assay for detecting natively folded structural domains (2006)
Hondoh, Takayuki, Kato, Atsushi, Yokoyama, Shigeyuki, Kuroda, Yutaka
Structural genomics projects require strategies for rapidly recognizing protein sequences appropriate for routine structure determination. For large proteins, this strategy includes the dissection of...
Chikayama, Eisuke, Kurotani, Atsushi, Kuroda, Yutaka, Yokoyama, Shigeyuki
Summary: ProteoMix is a suite of JAVA programs for identifying, annotating, and predicting regions of interest in large sets of amino acid sequences, according to systematic and consistent criteria....
Chikayama, Eisuke, Kurotani, Atsushi, Kuroda, Yutaka, Yokoyama, Shigeyuki
Summary: ProteoMix is a suite of JAVA programs for identifying, annotating and predicting regions of interest in large sets of amino acid sequences, according to systematic and consistent criteria....
Chikayama, Eisuke, Kurotani, Atsushi, Kuroda, Yutaka, Yokoyama, Shigeyuki
Summary: ProteoMix is a suite of JAVA programs for identifying, annotating, and predicting regions of interest in large sets of amino acid sequences, according to systematic and consistent criteria....
A strategy for the de novo design of helical proteins with stable folds (1995)
This paper describes peptide analogs and the design strategy that were used to facilitate the final construction of a de novo-designed protein (ALIN) whose stable tertiary fold has been determined...
Cooperative deformation of a de novo designed protein (1994)
Tanaka, Toshiki, Kuroda, Yutaka, Kimura, Hiromi, Kidokoro, Shun-ichi, Nakamura, Haruki
A de novo protein design has been made to understand the unique packing of natural proteins that have a β/α-barrel fold. A carefully designed 207 amino acid sequence was synthesized using an...
Computer-aided NMR assay for detecting natively folded structural domains
Hondoh, Takayuki, Kato, Atsushi, Yokoyama, Shigeyuki, Kuroda, Yutaka
Structural genomics projects require strategies for rapidly recognizing protein sequences appropriate for routine structure determination. For large proteins, this strategy includes the dissection of...
Islam, Mohammad Monirul, Sohya, Shihori, Noguchi, Keiichi, Yohda, Masafumi, Kuroda, Yutaka
We report the high-resolution crystal structures of an extensively simplified variant of bovine pancreatic trypsin inhibitor containing 20 alanines (BPTI-20st) and a reference single-disulfide-bonded...